| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,733,906 – 7,734,009 |
| Length | 103 |
| Max. P | 0.712197 |
| Location | 7,733,906 – 7,734,009 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 84.04 |
| Shannon entropy | 0.31025 |
| G+C content | 0.38864 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -16.61 |
| Energy contribution | -17.83 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7733906 103 + 24543557 AACCCAAUGCCAACCAUUAAAACUUGGUCAUAAAUAAAAUGCGUCGAAGGACAAGAACCUGCAUCGUAAUUGAGAUGUUUGU-UUUUGGCGCUAAUGGGUUGAA ((((((.((((.((((........))))..............(((....)))((((((..(((((........)))))..))-))))))))....))))))... ( -30.10, z-score = -2.94, R) >droSim1.chr3L 7238083 103 + 22553184 AACCCAAUGCCAGCAAUUAAAACUUGGUCAUAAAUAAAAUGCGUCGAAGGACAAGAACCUGCAUCGUAAUUGAGAUGUUUGU-UUUUGGCGCUAAUGGGUUGAA (((((((((((((..........)))).))).........(((((....).(((((((..(((((........)))))..))-)))))))))...))))))... ( -28.90, z-score = -2.38, R) >droSec1.super_0 47608 103 + 21120651 AACCCAAUGGCAGCCAUUAAAACUUGGUCAUAAAUAAAAUGCGUCGAAGGACAAGAACCUGCAUCGUAAUUGAGAUGUUUGU-UUUUGGCGCUAAUGGAUUGAA ...(((.((((.((((........))))............(((((....)))((((((..(((((........)))))..))-)))).)))))).)))...... ( -29.50, z-score = -2.66, R) >droYak2.chr3L 8331987 104 + 24197627 GACUCAAUGCCACGCAUUUCAACUUGGUCAUAAAUAAAAUGCGUCGAAGGACAAGAAUAUGCAUCGUAAUUGAGAUGUUUGUGUUUUGGCGCUAAUGGGUUGAA ((((((((((((.(........).))).))).........(((((((((.((((......(((((........))))))))).)))))))))...))))))... ( -28.60, z-score = -1.79, R) >droEre2.scaffold_4784 22147800 102 - 25762168 -GACCAAUGUCACGCAUAUAGAUUUGGUCAUAAAUAAAAUGCGUCGAAGGACAAGAACAUGCAUCGUAAUUGAGAUGUUUGU-UUUUGGCGCUAAUGGUUUGAA -((((((.(((.........))))))))).(((((.....(((((....).((((((((.(((((........))))).)))-))))))))).....))))).. ( -30.00, z-score = -2.87, R) >droAna3.scaffold_13337 10525469 100 + 23293914 AACCCAAUGACACGCACUUAAAGUUAGUCACAAAUAAAUAGCUUUGAAGGACAAGAACACGCAA---AGGUCAGUCGUC-AUAUUUUGGCUCUAAUGGUUGGUG ...((((((((......(((((((((............)))))))))..(((............---..))).)))(((-(.....)))).......))))).. ( -17.54, z-score = 0.49, R) >consensus AACCCAAUGCCACCCAUUAAAACUUGGUCAUAAAUAAAAUGCGUCGAAGGACAAGAACAUGCAUCGUAAUUGAGAUGUUUGU_UUUUGGCGCUAAUGGGUUGAA (((((((((.....))).......................(((((((((.((((......(((((........))))))))).)))))))))...))))))... (-16.61 = -17.83 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:06 2011