| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,582,715 – 4,582,806 |
| Length | 91 |
| Max. P | 0.595686 |
| Location | 4,582,715 – 4,582,806 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 95.38 |
| Shannon entropy | 0.07961 |
| G+C content | 0.51880 |
| Mean single sequence MFE | -28.92 |
| Consensus MFE | -25.32 |
| Energy contribution | -25.40 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.595686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4582715 91 + 23011544 CUGGCCAGACCAUAAAUGGACACACACGAUCUGUGGAGUGCAGUACAGACUGCUGCAGUCGAAAAACCCCAUGUGGCCAUAAAUGGAGCUG .....(((.((((..((((.(((((((.....)))((.(((((((.....))))))).))...........)))).))))..))))..))) ( -28.70, z-score = -1.77, R) >droSim1.chr2L 4469324 91 + 22036055 CUGGCCUGGCCAUAAAUGGACACACACGAUCUGUGGAGUGCAGUACAGACUGCUGCAGUCGAAAAACACCAUGUGGCCAUAAAUGGAGCUG ..(((((((((((..((((...((((.....))))((.(((((((.....))))))).))........))))))))))......)).))). ( -30.90, z-score = -1.99, R) >droSec1.super_5 2675900 91 + 5866729 CUGGCCAGACCAUAAAUGGACACACACGAUCUGUGGAGUGCAGUACAGACUGCUGCAGUCGAAAAACACCAUGUGGCCAUAAAUGGAGCUG .....(((.((((..((((.(((((((.....)))((.(((((((.....))))))).))...........)))).))))..))))..))) ( -28.70, z-score = -1.84, R) >droYak2.chr2L 4603420 90 + 22324452 CUGGCCAGACCAUAAAUGGACACACACGAUCUGGGGAGUGCAGUACGGACUGUUGCAGUUGAAAA-CCCCAUGUGGCCAUAAAUGGAGCUG .....(((.((((..((((...((((.....(((((.(((((((....)))).)))...(....)-))))))))).))))..))))..))) ( -24.70, z-score = -0.09, R) >droEre2.scaffold_4929 4668776 90 + 26641161 CUGGCCACACCAUAAAUGGACACACACGAUCUGGGGAGUGCAGUACAGACUGCUGCAGUCGAAAA-CCCCAUGUGGCCAUAAAUGGAGCUG .(((((((((((....)))............((((((.(((((((.....))))))).)......-)))))))))))))............ ( -31.60, z-score = -2.32, R) >consensus CUGGCCAGACCAUAAAUGGACACACACGAUCUGUGGAGUGCAGUACAGACUGCUGCAGUCGAAAAACCCCAUGUGGCCAUAAAUGGAGCUG ..(((....((((..((((.(((((((.....)))((.(((((((.....))))))).))...........)))).))))..)))).))). (-25.32 = -25.40 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:46 2011