Locus 6559

Sequence ID dm3.chr3L
Location 7,687,251 – 7,687,348
Length 97
Max. P 0.985667
window9028

overview

Window 8

Location 7,687,251 – 7,687,348
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 94.50
Shannon entropy 0.07574
G+C content 0.43299
Mean single sequence MFE -27.50
Consensus MFE -26.89
Energy contribution -27.00
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.29
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.21
SVM RNA-class probability 0.985667
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 7687251 97 + 24543557
UUUCUGUUUUGCAAUUAACAGAUGCCAAAUUCCAGAUGGAGCUUAGCUGAACCGGCCCAACUUGAACUGGGAUUGAGAUAAGCUUAGCUUCAUUCAG
..((((((........))))))............(((((((((.((((...((((((((........)))).))).)...)))).)))))))))... ( -27.90, z-score =  -2.22, R)
>droEre2.scaffold_4784 22100899 97 - 25762168
UUUCUGUUUCGCAAUCAACAGAUGCCAAGUUCCAGAUGGAGCUCAGCUGAACCGACCCAACUUGAACUGGGAUUGAGAUAAGCUUAGCUUCAUUCAG
..((((((........))))))............(((((((((.((((...((((((((........)))).))).)...)))).)))))))))... ( -27.80, z-score =  -1.96, R)
>droYak2.chr3L 8284170 97 + 24197627
UUUCUGUUUCGCAAUUAACAGAUGCCAAAUUCCAGAUGGAGCAUAGCUGAACCGACCCAACUUAAACUGGGAUUGAGAUGAGCUUAGCUUCAUUCAG
..((((((........))))))............((((((((..((((.(.((((((((........)))).))).).).))))..))))))))... ( -26.80, z-score =  -2.69, R)
>consensus
UUUCUGUUUCGCAAUUAACAGAUGCCAAAUUCCAGAUGGAGCUUAGCUGAACCGACCCAACUUGAACUGGGAUUGAGAUAAGCUUAGCUUCAUUCAG
..((((((........))))))............(((((((((.((((...((((((((........)))).))).)...)))).)))))))))... (-26.89 = -27.00 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:05 2011