| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,686,851 – 7,686,968 |
| Length | 117 |
| Max. P | 0.894046 |
| Location | 7,686,851 – 7,686,968 |
|---|---|
| Length | 117 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.95 |
| Shannon entropy | 0.28941 |
| G+C content | 0.41614 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -17.99 |
| Energy contribution | -18.09 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7686851 117 - 24543557 --AUGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAUCCGAAACCUUUACAAGAACAGAUGAACCUGAUAAGCUGCUCCAUAGUGUGGUAGCUCCCCCCGAUAUUCAGAAAUUG- --.((((.((....(((((((((((.((((((..((((((..........)))))).......))))))))))..)).))))).....)).))))........................- ( -25.00, z-score = -2.19, R) >droEre2.scaffold_4784 22100492 117 + 25762168 --AUGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAUCCGAAACCUUUACAAGAACAGAUGAACCUGAUAAGCUGCUCCAUAGUGUGGUAGCUCCCCCCGAUAUUCCGAAAUUG- --.((((.((....(((((((((((.((((((..((((((..........)))))).......))))))))))..)).))))).....)).))))........................- ( -25.00, z-score = -2.47, R) >droYak2.chr3L 8283768 117 - 24197627 --AUGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAACCGAAACCUUUACAAGAACAGAUGAACCUGAUAAGCUGCUCCAUAGUGUGGUAGCUCCCCCCGAUAUUCAGAAAUUU- --.((((.((....(((((((((((.((((((..((((((..........)))))).......))))))))))..)).))))).....)).))))........................- ( -25.00, z-score = -2.31, R) >droAna3.scaffold_13337 16479219 117 - 23293914 --AUGCCUAAAACAGAGCACUUCAGUGUUCAUAGUGUAAAACCCGAAACCUUUACAAGAACAGAUGAAACUGAUAAGCUGCUUCGUAGUAUGGUAGCUUCCCCCGAUAACCACAACA-UG --.((((((..((..(((((((((((.(((((..((((((..........)))))).......))))))))))..)).))))..))..)).))))......................-.. ( -22.10, z-score = -1.21, R) >dp4.chrXR_group6 1692173 119 - 13314419 AAACGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAACCGAAACAUUUACAAGAACCGAUGAACCUGAAAAGCUGCUUCCUAGUAUGGCAGUCUCCCCCGAUAUCCACAAAA-UG ....(((.......(((((((((((.((((((..((((((..........)))))).......))))))))))..)).)))))........))).(((......)))..........-.. ( -21.96, z-score = -2.22, R) >droPer1.super_12 2401872 120 - 2414086 AAACGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAACCGAAACAUUUACAAGAACCGAUGAACCUGAAAAGCUGCUUCCUAGUAUGGCAGUCUCCCCCGAUAUCCACAAAAGUG ....(((.......(((((((((((.((((((..((((((..........)))))).......))))))))))..)).)))))........))).(((......)))...(((....))) ( -22.46, z-score = -1.95, R) >droWil1.scaffold_181024 791457 117 + 1751709 --ACGCCUCAAACAGAGCACUGCAGUGUUCAUAAUGUAAAACCAGAAAUAUUUACAAGUACAGAUGAAACUGAUAAGCUGCUUCAUAAAAUGGCAGCUCCUCCCGAAGUCCCGAUAUCA- --............((((((....))))))....((((((..........))))))......((((.....((..(((((((.........)))))))..)).((......)).)))).- ( -22.70, z-score = -1.13, R) >droVir3.scaffold_13049 5828394 117 + 25233164 --ACGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUUAAAUCCGAAACAUUUACAAGUACAGAUGAAACUGAUAAGCUGCUUCAUAGAAUGGCAGCUGACCCUAAUAUCCAGAAACCA- --............((((((....))))))..((((((........))))))........(((......)))...(((((((.........))))))).....................- ( -21.30, z-score = -0.93, R) >droMoj3.scaffold_6680 17626491 117 + 24764193 --ACGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAACCGAAACAUUUACAAGUACAGAUGAAACUGAUAAGCUGCUACAUAGAAUGGCAGCUCCCCCCACUAUACAGAAACCA- --............((((((....))))))....((((((..........)))))).((((((......)))...((((((((.......))))))))..........)))........- ( -22.50, z-score = -2.13, R) >droGri2.scaffold_15110 7473871 117 + 24565398 --ACGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAUCCGAUACAUUUACAAGUACAGAUGAAACUGAUAAGCUGCUACACAGAAUGGCAGCUCCCCCCAAUAUCCCGAAACCA- --............((((((....))))))..((((((........))))))........(((......)))...((((((((.......)))))))).....................- ( -21.70, z-score = -1.87, R) >consensus __ACGCCUCAAACAGAGCACUUCAGUGUUCAUAAUGUAAAAACCGAAACAUUUACAAGAACAGAUGAAACUGAUAAGCUGCUUCAUAGUAUGGCAGCUCCCCCCGAUAUCCAGAAAUCA_ ..............((((((....))))))....((((((..........))))))....(((......)))...(((((((.........)))))))...................... (-17.99 = -18.09 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:03 2011