| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,677,929 – 7,677,985 |
| Length | 56 |
| Max. P | 0.785939 |
| Location | 7,677,929 – 7,677,985 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 65.15 |
| Shannon entropy | 0.66573 |
| G+C content | 0.44345 |
| Mean single sequence MFE | -14.82 |
| Consensus MFE | -6.06 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7677929 56 - 24543557 CUUUGGUAACUGGUGUUACAUUUGGUGGGGAUGGAUCUCCUCUCCAUCCUGAGGAA--- ((((.(((((....)))))....((((((((.((....))))))))))..))))..--- ( -18.80, z-score = -1.46, R) >droSim1.chr3L 7183071 56 - 22553184 CUUUGGUAACUUGUGUUACAGGUGGUGGGGUUAAAUCUCCUCUCCAUCCUGAAGAA--- ((((.(((((....)))))((((((.((((........)))).))).)))))))..--- ( -18.70, z-score = -2.54, R) >droSec1.super_1037 2230 56 - 6937 CUUUGGUAACUGGUGUUACAGGUGGUGGGGUUAAAUCUCCCCUCCAUCCUGAGGAA--- ((((.(((((....)))))((((((.((((........)))).))).)))))))..--- ( -21.40, z-score = -1.98, R) >droEre2.scaffold_4784 22095398 56 + 25762168 CAUUCGUAUCUGGUGUUACAGUUGGUGGGCGUAAAUCUCCACUUCAAUCUGAGGAA--- ..................(((..((((((........)))))).....))).....--- ( -8.60, z-score = 0.80, R) >droAna3.scaffold_13337 16475892 56 - 23293914 CUUUGAUCACUCCUUUGAUUGGUACUGGAGAAAAAUCACCUGUAAA---AGAUGAUUUG .........((((.............))))..((((((.((.....---)).)))))). ( -9.32, z-score = -0.80, R) >droWil1.scaffold_181024 782994 56 + 1751709 CAUCGGCAAUAACUCCUGUCAUUCUUGGAGUCAAAUCUCCUCUUAAGACAGACGAU--- ...............(((((......((((......))))......))))).....--- ( -12.10, z-score = -1.66, R) >consensus CUUUGGUAACUGGUGUUACAGGUGGUGGGGUUAAAUCUCCUCUCCAUCCUGAGGAA___ .....(((((....)))))..((((.((((......))))...))))............ ( -6.06 = -6.70 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:02 2011