| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,668,696 – 7,668,747 |
| Length | 51 |
| Max. P | 0.553698 |
| Location | 7,668,696 – 7,668,747 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 88.82 |
| Shannon entropy | 0.20316 |
| G+C content | 0.44314 |
| Mean single sequence MFE | -14.08 |
| Consensus MFE | -10.22 |
| Energy contribution | -10.42 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7668696 51 + 24543557 GGGUGGCUAAUAGGUUUGUCCAGUGGCUUGGGAAUUACUAUUUCGUCCUCA (((.(((.(((((.....(((((....))))).....)))))..)))))). ( -12.90, z-score = -0.71, R) >droSim1.chr3L 7187251 51 + 22553184 GGAUGGCUAAUAGGCUUGUCCUGUGGCUUGGGAAUAUCUAUUUCGUCAUCA .((((((.((((((....(((((.....)))))...))))))..)))))). ( -15.70, z-score = -2.20, R) >droSec1.super_1037 4202 51 + 6937 GGAUGGCUAAUAGGCUUGUCUUGUGGCUUGGGAAUAUCUAUUUCGUCAUCG .((((((...((((((........))))))(((((....))))))))))). ( -14.60, z-score = -2.53, R) >droYak2.chr3L 8274792 51 + 24197627 GGCUGGCUAAUAGGUUUGUCAUGUGGGUUUGGAAUAUCUAUUUCUUCAUCA (((..(((....)))..)))(((.(((..(((.....)))..))).))).. ( -9.60, z-score = -0.79, R) >droEre2.scaffold_1443 6933 51 + 9948 GGGUGGCUAAUAGGUUUGUCCUGAGGCUUGGGAAUAUCUAUUUCGUCAUCA .((((((.(((((((...(((..(...)..)))..)))))))..)))))). ( -17.60, z-score = -3.06, R) >consensus GGAUGGCUAAUAGGUUUGUCCUGUGGCUUGGGAAUAUCUAUUUCGUCAUCA .((((((.((((((....(((........)))....))))))..)))))). (-10.22 = -10.42 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:10:01 2011