| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,616,757 – 7,616,853 |
| Length | 96 |
| Max. P | 0.647937 |
| Location | 7,616,757 – 7,616,853 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.17 |
| Shannon entropy | 0.45723 |
| G+C content | 0.41943 |
| Mean single sequence MFE | -18.96 |
| Consensus MFE | -12.42 |
| Energy contribution | -11.86 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647937 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 7616757 96 + 24543557 ---------CAAUGCCCACCAGCCGCCAUUAGCAGCAAUUU-CAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---ACUUCUCCCCG---- ---------...........((((((..((((((((.....-..............)))).))))..))))))........(((((......)))---)).........---- ( -18.91, z-score = -2.20, R) >droSim1.chr3L 7131281 96 + 22553184 ---------CAAUGCCCACCAGCCGCCAUUAGCAGCAAUUU-CAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---ACUUCUCCCCG---- ---------...........((((((..((((((((.....-..............)))).))))..))))))........(((((......)))---)).........---- ( -18.91, z-score = -2.20, R) >droSec1.super_2 7546049 96 + 7591821 ---------CAAUGCCCACCAGCCGCCAUUAGCAGCAAUUU-CAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---ACUUCUCCCCG---- ---------...........((((((..((((((((.....-..............)))).))))..))))))........(((((......)))---)).........---- ( -18.91, z-score = -2.20, R) >droYak2.chr3L 8222938 97 + 24197627 ---------CAAUGCCCACCGGCCGCCAUUAGCGGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---ACUUCGCCCCG---- ---------....((.....((((((.(((((((.....................))))))).....))))))........(((((......)))---))...))....---- ( -19.80, z-score = -0.66, R) >droEre2.scaffold_4784 22041382 97 - 25762168 ---------CAAUGCCCACCAGCCGCCAUUAGCGGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---ACUUGCCCCCG---- ---------....(((.....(((((.....)))))........(((((((.((.....)).))))))))))......(..(((((......)))---))..)......---- ( -19.70, z-score = -1.19, R) >droAna3.scaffold_13337 16422946 100 + 23293914 ------CCUUAAUGCCCACCGGCUGCCAUUAGCAGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---GCUUUGGCCCG---- ------.......(((.....(((((.....)))))...................((((.......))))(((((.((((......))))..)))---))...)))...---- ( -22.20, z-score = -0.51, R) >dp4.chrXR_group6 1627572 106 + 13314419 GCUCCCCUCCUCCACCGAACAGCUGCCAUUAGCAGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---GUUUUCCUUCG---- ...........((((..(((.(((((.....)))))...............................(((((.........))))).)))..)))---)..........---- ( -18.40, z-score = -1.16, R) >droPer1.super_12 2318077 106 + 2414086 GCUCCCCUCCUCCACCGAACAGCUGCCAUUAGCAGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG---GUUUUCCUUCG---- ...........((((..(((.(((((.....)))))...............................(((((.........))))).)))..)))---)..........---- ( -18.40, z-score = -1.16, R) >droWil1.scaffold_180698 6186691 113 + 11422946 GUUUUUUAUUAAUGCUUAGCAGCUGCCAUUAGCAGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACAUACAAACUAACAUAUAUGUA ................((((.(((((.....)))))...................((((.......))))))))......(((..(((((.......))))))))........ ( -17.60, z-score = 0.38, R) >droVir3.scaffold_13049 5630675 88 + 25233164 ----------------GGCUAGCUGCCAUUAGCAGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAUUUACAACUG----GCCGCAG----- ----------------((((((((((.....)))))..........................((((.(((((.........))))).))))....))----)))....----- ( -20.30, z-score = -1.34, R) >droMoj3.scaffold_6680 3972983 96 + 24764193 ----------------GGCCACCUGCCAUUAGCAGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAUUUACAGUCGAGCAGCCGCAGCAAC- ----------------(((...((((.....)))).....................((((((((((.(((((.........))))).))))..))).))).)))........- ( -18.80, z-score = -0.46, R) >droGri2.scaffold_15110 11149833 92 - 24565398 ----------------CGCCAGCUGCCAUUAGUGGCAAUUUUCCAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAAAUUUA-GUAUUUACUAGCCAAUG---- ----------------.(((((((((((....)))))...................))))((((((..((((.........))))..))))-))........)).....---- ( -15.60, z-score = -0.14, R) >consensus _________CAAUGCCCACCAGCUGCCAUUAGCAGCAAUUUUCAAUUUUUAUUUACGCUGAUUAAAAGUGGCUACCAACUUGUCAUAGUUACGUG___ACUUCCCCCCG____ ....................((((((..((((((((....................)))).))))..))))))........................................ (-12.42 = -11.86 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:58 2011