| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,607,275 – 7,607,373 |
| Length | 98 |
| Max. P | 0.681451 |
| Location | 7,607,275 – 7,607,373 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 73.22 |
| Shannon entropy | 0.46785 |
| G+C content | 0.56368 |
| Mean single sequence MFE | -37.90 |
| Consensus MFE | -16.26 |
| Energy contribution | -19.26 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7607275 98 + 24543557 --GGAUUGGAUCCGAUCGGAACAG-AUCGAAUCUGAGAUGGAGAUGGGG--AAGGCACCGGCAUCGUCAUCGCCACC------GCCAAUGGAACAUGGUACUUGGCAUG --...(..(((.(((((......)-)))).)))..)((((..((((((.--......))..))))..))))((((..------((((........))))...))))... ( -32.70, z-score = -0.80, R) >droAna3.scaffold_13337 16413269 91 + 23293914 --GGGUCCAAUCCAAUCGGUUUGG-AUCGGCUCUGAGAUCGAGACGACACCGGCGCACUGAGAAUGGAACUUGGAUC-UUGGAGCCGCCAAGUCA-------------- --.(((((((.((....)).))))-)))(((((..((((((((.((....)).....((......))..))).))))-)..))))).........-------------- ( -33.30, z-score = -1.38, R) >droEre2.scaffold_4784 22031690 104 - 25762168 --GGUUUGGAUCCGAUCGGAACAG-AUCGGAUCUGAGAUGGAGAUGGGG--AAGGCACCGGCAUCGUCACCGUCACCGUCACCGCCAAUGGAACAUGGUACUUGGCAUG --((((..(((((((((......)-))))))))..)(((((.(((((.(--(..((....))....)).))))).))))))))(((((.(..........))))))... ( -44.90, z-score = -3.03, R) >droSec1.super_2 7536600 102 + 7591821 GGGGAUUGGAUCCGAUCGGAACAGGAUCGGAUCUGAGAUGGAGAUGGGGG-AAGGCACCGGCAUCGUCACCGUCACC------GCCAAUGGAACAUGGUACUUGGCAUG .((..(..(((((((((.......)))))))))..)(((((.(((((..(-..(....)..).))))).))))).))------(((((.(..........))))))... ( -38.70, z-score = -1.79, R) >droSim1.chr3L 7121511 98 + 22553184 --GGAUUGGAUCCGAUCGGAACAG-AUCGGAUCUGAGAUGGAGAUGGGG--AAGGCACCGGCAUCGUCACCGUCACC------GCCAAUGGAACAUGGUACUUGGCAUG --((.(..(((((((((......)-))))))))..)(((((.((((..(--..(....)..)..)))).))))).))------(((((.(..........))))))... ( -39.90, z-score = -2.71, R) >consensus __GGAUUGGAUCCGAUCGGAACAG_AUCGGAUCUGAGAUGGAGAUGGGG__AAGGCACCGGCAUCGUCACCGUCACC______GCCAAUGGAACAUGGUACUUGGCAUG ..((.((((((((((((......).)))))))))))(((((.(((((......(....)....))))).))))).))......(((((.............)))))... (-16.26 = -19.26 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:57 2011