| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,605,022 – 7,605,122 |
| Length | 100 |
| Max. P | 0.784527 |
| Location | 7,605,022 – 7,605,122 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.49355 |
| G+C content | 0.38073 |
| Mean single sequence MFE | -22.09 |
| Consensus MFE | -9.76 |
| Energy contribution | -10.93 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7605022 100 + 24543557 UUUGGCAUGGUAAUUGAUACACAGGAAACAUGUGGAGUAGGAAAUCAAUUGGAGCAGCCAAAUAGGAAAUGGCGAAAAUAGCCAGCUAUUCUAUUCAAAA--------- .(((((.((.((((((((.(((((....).)))).........))))))))...)))))))((((((..((((.......))))....))))))......--------- ( -25.10, z-score = -2.49, R) >droSim1.chr3L 7119315 96 + 22553184 UUGGGCAUGGAAAUUGAUACACAGGAAACAUGUGGAGUAGGAAAUCAAUUGGAGCAGCCAAAUAGGAAAUGGCGAAAAUAGCCAGCUAUUCUAUUC------------- ...(((.((..(((((((.(((((....).)))).........)))))))....))))).(((((((..((((.......))))....))))))).------------- ( -24.00, z-score = -2.50, R) >droSec1.super_2 7534387 94 + 7591821 UUGGGCAUGGAAAUUGAUACACAGGAAACAUGUGGAGUAGGAAAUCAAUUGGAGCAGCCAAAUAGGAAAUGGCGAAAAUAGCCAGCUAUUCUAU--------------- ...(((.((..(((((((.(((((....).)))).........)))))))....)))))..((((((..((((.......))))....))))))--------------- ( -23.00, z-score = -2.31, R) >droYak2.chr3L 8210657 96 + 24197627 UUGAGCAUGGUAAUUGAUACACAGGAAACAUGUGGAGUAGGAAAUCAAUUAGAGCAGCCAAAUAGGAAAUGGCGAAAAUAGCCAGCUAUUCUAUUC------------- .((.((.((.((((((((.(((((....).)))).........))))))))...))))))(((((((..((((.......))))....))))))).------------- ( -21.60, z-score = -1.94, R) >droEre2.scaffold_4784 22029510 96 - 25762168 UUGGGCAUGGAAAUUUAUGCACAGGAAACAUGUGGAGUAGGAAAUCAAUUGGAGCAGCCAAAUAGGAAAUGGCGAAAAUAGCCAGCUAUUCUAUUC------------- .((.((((((....)))))).))(....)..(((((((((........((((.....))))........((((.......)))).)))))))))..------------- ( -24.00, z-score = -2.05, R) >droAna3.scaffold_13337 16411178 107 + 23293914 UUUCGGAUGGUAAUCGAU--ACAGGAAACAUGUGGAAUAGGAAAUCAAUUGGAGCAGCCCAAUAGGAAAUGGCGAAAAUAGCCGAUUAAACGCCAGAAUAAAUCUGGUC .(((.(((....)))..(--((((....).))))))).....((((.(((((......))))).......(((.......)))))))....((((((.....)))))). ( -23.70, z-score = -1.22, R) >droWil1.scaffold_180698 6171089 92 + 11422946 UUAGGUAUUUUCAUU-------AUGAAAUAGUUUUGCCUAACACUUCCUUGGAAUUGUUAAAU--GAAAUUUCAAAAGAAACCCAAAACUCCAAUUCAAAA-------- ...((...((((...-------..)))).(((((((..(((((.(((....))).)))))...--....((((....))))..))))))))).........-------- ( -13.20, z-score = -0.79, R) >consensus UUGGGCAUGGUAAUUGAUACACAGGAAACAUGUGGAGUAGGAAAUCAAUUGGAGCAGCCAAAUAGGAAAUGGCGAAAAUAGCCAGCUAUUCUAUUC_____________ .......................(....)..(((((((((........((((.....))))........((((.......)))).)))))))))............... ( -9.76 = -10.93 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:56 2011