| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,581,874 – 4,581,974 |
| Length | 100 |
| Max. P | 0.603980 |
| Location | 4,581,874 – 4,581,974 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 82.10 |
| Shannon entropy | 0.36221 |
| G+C content | 0.46962 |
| Mean single sequence MFE | -31.07 |
| Consensus MFE | -19.99 |
| Energy contribution | -21.96 |
| Covariance contribution | 1.97 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4581874 100 + 23011544 UUACGCCUCUGCGGUCGCAAUUUAUUUCCAGUUUUUAA-UUGAAAAGGCUGGCCUCCGACGGGG-AUUCUGGAUUGCGGCCACAUUUUGCUGCACAAUGUGU ....((....))((((((((((((...(((((((((..-....)))))))))((((....))))-....))))))))))))((((.(((.....))).)))) ( -32.50, z-score = -1.77, R) >droSim1.chr2L 4468486 100 + 22036055 UUACGCCGCUGCGGUCGCAAUUUAUUUCCAGUUUUUAA-UUGAAAAGGCUGGCCUCCGAUGGGG-AUUCUGGAUUGCGGCCACAUUUUGCCGCACAAUGUGU ....((.((((.((((((((((((...(((((((((..-....)))))))))((((....))))-....)))))))))))).))....)).))......... ( -34.30, z-score = -1.64, R) >droSec1.super_5 2675077 100 + 5866729 UUACGCCGCUGCGGUCGCAAUUUAUUUCCAGUUUUUAA-UUGAAAAGGCUGGCCUCCGAUGGGG-AUUCUGGAUUGCGGCCACUUUUUGCCGCACAAUGUGU ....((.((.(.((((((((((((...(((((((((..-....)))))))))((((....))))-....)))))))))))).).....)).))......... ( -33.70, z-score = -1.55, R) >droYak2.chr2L 4602670 100 + 22324452 UUACGCGGCUGCGGUCGCAAUUUAUUUCCAGUUUUUAA-UUGAAAAGGCUGGCCUCCGACGGGG-AUACUGGAUUGCGGCCACAAUUUGCUGCACAAUGUGU ....(((((((.((((((((((((...(((((((((..-....)))))))))((((....))))-....)))))))))))).))....)))))......... ( -38.30, z-score = -3.18, R) >droEre2.scaffold_4929 4667949 100 + 26641161 UUACGCCGUUGCGGUCGCAAUUUAUUUCCAGUUUUUAA-UUGAAAAGGCUGGCCUCCGACGGGG-AUACUGGAGUGCGGCCACAAUUUGCUGCACAAUGUGU ....((.((((.(((((((.((((...(((((((((..-....)))))))))((((....))))-....)))).))))))).))))..)).((((...)))) ( -31.40, z-score = -0.87, R) >droAna3.scaffold_12943 1780406 101 - 5039921 UUACGCCGCUGCGGUCGCAAUUUAUUUCAAGAUUUUAA-UUGAAAAGGCAGGCCACAGAGGCUGCGAUCUGGACUGUGGCUUCAAUUUGCAGCACAAUGUGU .......(((((((((((......((((((........-))))))..)).))))...(((((..((........))..))))).....)))))......... ( -31.30, z-score = -1.16, R) >droWil1.scaffold_180703 1323552 89 - 3946847 UUACGCCACUGCGGUUGCAAUUUAUUUCAAGUUUUUAAAUUGAAUAGGCCGUACCCCAAGUGUU--ACCUACAUACAGAUCUCAAAUGGAU----------- .....(((.(((((((.(((((((...........)))))))....)))))))......((((.--....))))............)))..----------- ( -16.00, z-score = -0.54, R) >consensus UUACGCCGCUGCGGUCGCAAUUUAUUUCCAGUUUUUAA_UUGAAAAGGCUGGCCUCCGACGGGG_AUUCUGGAUUGCGGCCACAAUUUGCUGCACAAUGUGU ....((.((((.((((((((((((...(((((((((.......)))))))))((((....)))).....)))))))))))).))....)).))......... (-19.99 = -21.96 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:45 2011