| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,597,997 – 7,598,088 |
| Length | 91 |
| Max. P | 0.585510 |
| Location | 7,597,997 – 7,598,088 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 72.03 |
| Shannon entropy | 0.53572 |
| G+C content | 0.49574 |
| Mean single sequence MFE | -30.19 |
| Consensus MFE | -14.07 |
| Energy contribution | -15.30 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7597997 91 + 24543557 AUGUAACGUUACAGCUGCU-GCUUGUGCAGCCCUG----GC-GCC--UAACAGUAGCUGUUAAAAAUGGUCAAAACUAACAGCGCGCUAACAGCGGCUG- ...........((((((((-(...((((.((....----))-...--........(((((((..............)))))))))))...)))))))))- ( -32.74, z-score = -1.43, R) >droEre2.scaffold_4784 22022576 91 - 25762168 GUGUAACAUUACAGCUGCU-GCUUGUGCAGCCCUG----GC-GCC--UAACAGCGGCUGUUAAAAAUGGCCAAAACUAACAGCGCGCUAACAGCGGCUG- ......(((((((((((((-(.(((.((.((....----))-)).--)))))))))))))....))))...........((((.(((.....)))))))- ( -33.60, z-score = -1.03, R) >droSec1.super_2 7527591 91 + 7591821 UUGUAACAUUACAACUGCU-GCUUGUGCAGCCCUG----GC-GCC--UAACAGUCGCUGUUAAAAAUGGUCAAAACUAACAGCGCGCUAACAGCGGCUG- (((((....)))))..(((-((....)))))....----..-...--...((((((((((((....((((....))))...(....)))))))))))))- ( -27.00, z-score = -0.73, R) >droSim1.chr3L 7112417 92 + 22553184 UUGUAACAUUACAGCUGCU-GCUUGUGCAGCCCUG----GCUACC--UAACAUUCGCUGUUAAAAAUGGUCAAAACUAACAGCGCGCCAACAGCGGCUG- ...........((((((((-(...(((((((....----)))...--........(((((((..............)))))))))))...)))))))))- ( -32.84, z-score = -3.04, R) >droWil1.scaffold_180698 6161860 95 + 11422946 ----AGCAAUAU-GCUGUUAGCCCGUGCUGUCCCAAGCCGCUGCUGUUAACAGGCUCUGUUAAUAUUGGUCGAAACUAACAGAGCGAUAGCAUGAAGCGU ----.((..(((-(((((((((.((.(((......)))))..)))........(((((((((..............))))))))))))))))))..)).. ( -31.54, z-score = -2.08, R) >droAna3.scaffold_13337 16403644 86 + 23293914 -----GCGUAACAGUGCCCCUUCCAUA-AGCUCUG-------GCUGUUAACAGGCACUGUUAAAUAAGGCAUAAAUUAACAGAGGCUUGCAAACUGUCA- -----((.((((((((((.........-(((....-------))).......))))))))))....((((..............)))))).........- ( -21.53, z-score = -0.41, R) >droYak2.chr3L 8203632 91 + 24197627 GUGUAACAUUACAGCUGCU-GCUUGUGCAGCCCUG----GC-GCC--UAACAGCAGCUGUUAAAAAUGGUCUAAACUAGCAGCGCGCUAACAGUGGCUG- ......(((((((((((((-(.(((.((.((....----))-)).--)))))))))))))....))))...........((((.(((.....)))))))- ( -32.10, z-score = -0.42, R) >consensus _UGUAACAUUACAGCUGCU_GCUUGUGCAGCCCUG____GC_GCC__UAACAGUCGCUGUUAAAAAUGGUCAAAACUAACAGCGCGCUAACAGCGGCUG_ ...........((((((((.....((((.((........))..............(((((((..............)))))))))))....)))))))). (-14.07 = -15.30 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:54 2011