| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,596,821 – 7,596,941 |
| Length | 120 |
| Max. P | 0.576243 |
| Location | 7,596,821 – 7,596,941 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 77.14 |
| Shannon entropy | 0.46630 |
| G+C content | 0.56792 |
| Mean single sequence MFE | -35.52 |
| Consensus MFE | -21.63 |
| Energy contribution | -21.63 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7596821 120 + 24543557 UGCACCAGAGCGAUUUCGAC-UUACCGCCGACGUGGACGCCAC---GCUGGCCCGGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCGAUUUUAAUCCA ....((((.(((((...((.-.....((((.(((((...))))---).))))..(((((.....))))).)).)))))((.........))...))))(((((....)))))............ ( -39.80, z-score = -1.34, R) >droAna3.scaffold_13337 16401963 96 + 23293914 -------------------------UGCGGACACGGACGACAU---GCUGGCCCGGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCGAUUUUAAUCCA -------------------------...(((..((.(((.(.(---((..((((((..(((((((((....))))))............)))..))))))..))).)))).)).......))). ( -28.80, z-score = -0.15, R) >droEre2.scaffold_4784 22021430 120 - 25762168 UGCACCACAGCGACCUGGAC-UUCCCGCGGACGUGGACGCCAC---GCUGGCCCGGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACCCGUGCGAUUUUAAUCCA .((((..(((((...(((.(-.(((((....)).))).)))))---))))((((((..(((((((((....))))))............)))..))))))........))))............ ( -38.70, z-score = -0.63, R) >droYak2.chr3L 8202504 120 + 24197627 UGCAUCACAGCGACUUCGAC-UUCCCGCCGACGUGGACGCCAC---GCUGGCCCGGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCCAUUUUAAUCCA .........(((((......-.....((((.(((((...))))---).))))..(((((.....)))))....)))))...................((((((....))))))........... ( -41.60, z-score = -2.24, R) >droSec1.super_2 7526460 120 + 7591821 UGCACCAGAGCAACUUCGAC-UACCCGCCGACGUGGACGCCAC---GCUGGCCCGGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCGAUUUUAAUCCA (((..((((...........-.....((((.(((((...))))---).))))..(((((.....))))).))))..)))........(((.....)))(((((....)))))............ ( -38.00, z-score = -1.07, R) >droSim1.chr3L 7111252 120 + 22553184 UGCACCAGAGCGACUUCGAC-UACCCGCCGACGUGGACGCCAC---GCUGGCCCGGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCGAUUUUAAUCCA ....((((.(((((......-.....((((.(((((...))))---).))))..(((((.....)))))....)))))((.........))...))))(((((....)))))............ ( -41.80, z-score = -1.92, R) >droWil1.scaffold_180698 6160353 107 + 11422946 -------------UGUUCGA-UACCCUCUGAGGUGGACACCAU---GCUGGCCCAACUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCGAUAUUAAUCCA -------------...(((.-((((......))))..((((.(---((..(((((...(((((((((....))))))............)))...)))))..))).).)))))).......... ( -25.20, z-score = 0.84, R) >droVir3.scaffold_13049 5607142 111 + 25233164 --------UGCGACGGAGCU--GACUGUGGAUGUGGAUGUCAU---GCUGGCUGAACUGAUUGACAGGCAUCUGUCGCACAUUUAUCCCAUCUACUGGGCACGCACGCGUGCGAUUUUAAUGCG --------(((((((((((.--..((((.(((..(...(((..---...)))....)..))).)))))).)))))))))((((.((((((.....)))(((((....))))))))...)))).. ( -36.50, z-score = -0.80, R) >droMoj3.scaffold_6680 3947906 92 + 24764193 --------------------------------GCGGAUGGGGUCCAGCUGGCUGAGCUGAUUGACAGGCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCGAUUUUAAUGCG --------------------------------(((((((((((.(((((.....)))))...(((((....)))))........))))))))).....(((((....))))).........)). ( -35.60, z-score = -1.69, R) >droGri2.scaffold_15110 11127919 113 - 24565398 --------CGGGAUGUGGCUGUGGAUGUGGAUGUGGAUGGGUU---GCUGGGUGAACUGAUUGACAGGCAUCUGUCGCACAUUUAUCCCAUCUACUGGGCACGCACGCGUGCGAUUUUAAUGCG --------..(.(((((((.(((...(((((((.(((((((((---((..((....))....(((((....)))))))).)))))))))))))))....))))).))))).)............ ( -39.90, z-score = -1.31, R) >droPer1.super_12 2295702 92 + 2414086 -----------------------------GAUGUGGACGCCAU---GCUGGCCCAGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCAAUAUUAAUCCA -----------------------------((((((.((((..(---((..((((((..(((((((((....))))))............)))..))))))..))).)))).).)))))...... ( -30.20, z-score = -1.32, R) >dp4.chrXR_group6 1605304 92 + 13314419 -----------------------------GAUGUGGACGCCAU---GCUGGCCCAGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCAAUAUUAAUCCA -----------------------------((((((.((((..(---((..((((((..(((((((((....))))))............)))..))))))..))).)))).).)))))...... ( -30.20, z-score = -1.32, R) >consensus _________GCGAC_U_GAC_U_CCCGCCGACGUGGACGCCAU___GCUGGCCCAGCUGAUUGACAGCCAUCUGUCGCACAUUUAUCCCGUCUACUGGGCACGCACGCGUGCGAUUUUAAUCCA ................................(((((((..........((.....))....(((((....)))))............)))))))...(((((....)))))............ (-21.63 = -21.63 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:54 2011