| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,547,676 – 7,547,767 |
| Length | 91 |
| Max. P | 0.786101 |
| Location | 7,547,676 – 7,547,767 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.40 |
| Shannon entropy | 0.39242 |
| G+C content | 0.38728 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -11.77 |
| Energy contribution | -11.39 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.786101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7547676 91 - 24543557 --------------CCACCGCUAAUGAUCUAUGAAGUGCAAGU--GUCUGUACUUUUACUUUCAUUU-------AUCAAAAGUGGAGGCGUCAUCU----CUUUUGGCAAAAAAAUAA --------------((.(((((..((((..((((((((.((((--(....))))).))).)))))..-------))))..))))).)).((((...----....)))).......... ( -24.40, z-score = -3.50, R) >droSim1.chr3L 7061705 89 - 22553184 --------------CCACCGCUAAUGAUCUAUGAAGUGCAAGU--GUCUGUACUUUUACUUUCAUUU-------AUCAAAAGUGGAGGCGUCAUCU----CUUUUGGCCGAACUGA-- --------------((.(((((..((((..((((((((.((((--(....))))).))).)))))..-------))))..))))).)).((((...----....))))........-- ( -23.50, z-score = -2.12, R) >droSec1.super_2 7477126 89 - 7591821 --------------CCACCGCUAAUGAUCUAUGAAGUGCAAGU--GUCUGUACUUUUACUUUCAUUU-------AUCAAAAGUGGAGGCGUCAUCU----CUUUUGGCCAAACUAA-- --------------((.(((((..((((..((((((((.((((--(....))))).))).)))))..-------))))..))))).)).((((...----....))))........-- ( -23.50, z-score = -2.87, R) >droYak2.chr3L 8151602 89 - 24197627 --------------UCACCGCUAAUGAUCUAUGAAGUGCAAGU--GUCUGUACUUUUACUUUCAUUU-------AUCAAAAGUGGAGGCGUCAUCU----CUUUUGGCCAAAAAAA-- --------------...(((((..((((..((((((((.((((--(....))))).))).)))))..-------))))..))))).(((.......----......))).......-- ( -22.82, z-score = -2.92, R) >droEre2.scaffold_4784 21971452 89 + 25762168 --------------CCACCGCUAAUGAUCUAUGAAGUGCAAGU--GUCUGUACUUUUACUUUCAUUU-------AUCAAAAGUGGAGGCGUCAUCU----CUUUUGGCCAAAAAAA-- --------------((.(((((..((((..((((((((.((((--(....))))).))).)))))..-------))))..))))).)).((((...----....))))........-- ( -23.50, z-score = -3.07, R) >droAna3.scaffold_13337 16359137 85 - 23293914 ---------------CUCCGCUAAUGAUCUAUGAAGUGCAAGU--GUUUGUACUUUUACUUUCAUUU-------AUCAAAAGUGGAGGCGUCAUCUCU------UGGCCGAGACA--- ---------------(((((((..((((..((((((((.((((--(....))))).))).)))))..-------))))..)))))))......((((.------.....))))..--- ( -26.80, z-score = -3.32, R) >dp4.chrXR_group6 1554053 100 - 13314419 --------------CCACCGCUAAUGAUCUAUGAAGUGUGAGU--GUUUGUACUUUUACUUUCAUUUAUCACAAAUCACAAAUGGAGGCGGCAUCUGCUGCUGCUGGCCCAGACAC-- --------------..........((((..((((((((.((((--(....))))).))).)))))..))))...........(((.(((((((.....)))))))...))).....-- ( -24.90, z-score = -0.65, R) >droPer1.super_12 2244606 100 - 2414086 --------------CCACCGCUAAUGAUCUAUGAAGUGUGAGU--GUUUGUACUUUUACUUUCAUUUAUCACAAAUCACAAAUGGAGGCGGCAUCUGCUGCUGCUGGCCCAGACAC-- --------------..........((((..((((((((.((((--(....))))).))).)))))..))))...........(((.(((((((.....)))))))...))).....-- ( -24.90, z-score = -0.65, R) >droWil1.scaffold_180698 5311381 102 + 11422946 CUACAACUACAGGCUAACCGCUAAUGAUCUAUGAAAUGUAAGUGUGUUUGUACUUUUACUUUCAUUU-------AUCAUAAAUGGAGGCGUCA-------UUUGAGGCCAAGACCA-- ...........((((..(((.(.(((((..((((((.(((((.(((....))).)))))))))))..-------))))).).))).(((.((.-------...)).))).)).)).-- ( -26.60, z-score = -2.39, R) >droVir3.scaffold_13049 5555874 87 - 25233164 --------------CUAACGCUAAUGAUCUAUGAAGUGUAAGUGUUUUUGUACUUUUACUUUCAUUU-------AUCAUAAAUGGAGGCGUCA-------UUUGUGCUCAAGCCA--- --------------.....(((.(((((..((((((((.(((((......))))).))).)))))..-------))))).....((((((...-------..))).))).)))..--- ( -18.90, z-score = -1.46, R) >droMoj3.scaffold_6680 3896258 86 - 24764193 --------------GUAACGCUAAUGAUCUAUGAAGUGUAAGUG-CUUUGUACUUUUACUUUCAUUU-------AUCAUAAAUGGAGGCGUCA-------UUUGUGCUCGACACU--- --------------((...((....(((..((((((((.(((((-(...)))))).))).)))))..-------)))((((((((.....)))-------)))))))...))...--- ( -19.30, z-score = -1.37, R) >droGri2.scaffold_15110 11083056 87 + 24565398 --------------GCAACGCUAAUGAUCUGUGAAGUGUAAGUA-UUUUGUACUUUUACUUUCAUUU-------AUCAUAAAUGGAAGCGUCA------UUUUGUGCUCAAGACA--- --------------((((((((.(((((..((((((((.(((((-(...)))))).))).)))))..-------))))).......)))))..------.....)))........--- ( -17.91, z-score = -0.86, R) >consensus ______________CCACCGCUAAUGAUCUAUGAAGUGCAAGU__GUUUGUACUUUUACUUUCAUUU_______AUCAAAAAUGGAGGCGUCAUCU____CUUUUGGCCAAGACAA__ ..................(((((((((.....((((((((........)))))))).....))))).........(((....))).))))............................ (-11.77 = -11.39 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:45 2011