| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,543,668 – 7,543,761 |
| Length | 93 |
| Max. P | 0.777869 |
| Location | 7,543,668 – 7,543,761 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 92.24 |
| Shannon entropy | 0.15002 |
| G+C content | 0.55024 |
| Mean single sequence MFE | -34.62 |
| Consensus MFE | -29.85 |
| Energy contribution | -31.38 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7543668 93 - 24543557 AUUUUAGCCACUGGAGCGAUCAUCGAGCUGCUCCG-CCGUUAUUGUUAUUGCCAUGGCCAAAAGCCUGGCAUCGCAUCGGAUGGCUGGAGCUCC- .(((((((((..((((((.((...))..)))))).-(((....(((...(((((.(((.....))))))))..))).))).)))))))))....- ( -36.50, z-score = -2.19, R) >droAna3.scaffold_13337 16354885 84 - 23293914 -----AGCCACUGGAGCGAUCAUCAAGCUGCUCCGACCGUUAUUGUUAUUGCUAUUGCCA------UGGCCUGGCAUCGGCUGGCUGGAGCUCCA -----(((((.(((((((..........)))))))...............(((..(((((------.....)))))..))))))))((....)). ( -27.10, z-score = 0.15, R) >droEre2.scaffold_4784 21967263 93 + 25762168 AUUUUAGCCACUGGAGCGAUCAUCGAGCUGCUCCG-CCGUUAUUGUUAUUGCCAUGGCCAAAAGCCUGGCAUCGCAUCGGAUGGCUGGAGCUCC- .(((((((((..((((((.((...))..)))))).-(((....(((...(((((.(((.....))))))))..))).))).)))))))))....- ( -36.50, z-score = -2.19, R) >droYak2.chr3L 8147323 93 - 24197627 AUUUUAGCCACUGGAGCGAUCAUCGAGCUGCUCCG-CCGUUAUUGUUAUUGCCAUGGCCAACAGCCUGGCAUCGCAUCGGAUGGCUGGAGCUCC- .(((((((((..((((((.((...))..)))))).-(((....(((...(((((.(((.....))))))))..))).))).)))))))))....- ( -36.50, z-score = -2.12, R) >droSec1.super_2 7473157 93 - 7591821 AUUUUAGCCACUGGAGCGAUCAUCGAGCUUGUCCG-CCGUUAUUGUUAUUGCCAUGGCCAAAAGCCUGGCAUCGCAUCGGAUGGCUGGAGCUCC- .((((((((((((..((((....((.((......)-)))..........(((((.(((.....))))))))))))..))).)))))))))....- ( -34.60, z-score = -1.88, R) >droSim1.chr3L 7057653 93 - 22553184 AUUUUAGCCACUGGAGCGAUCAUCGAGCUGCUCCG-CCGUUAUUGUUAUUGCCAUGGCCAAAAGCCUGGCAUCGCAUCGGAUGGCUGGAGCUCC- .(((((((((..((((((.((...))..)))))).-(((....(((...(((((.(((.....))))))))..))).))).)))))))))....- ( -36.50, z-score = -2.19, R) >consensus AUUUUAGCCACUGGAGCGAUCAUCGAGCUGCUCCG_CCGUUAUUGUUAUUGCCAUGGCCAAAAGCCUGGCAUCGCAUCGGAUGGCUGGAGCUCC_ .(((((((((..((((((..........))))))..(((....(((...(((((.(((.....))))))))..))).))).)))))))))..... (-29.85 = -31.38 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:44 2011