| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,507,833 – 7,507,926 |
| Length | 93 |
| Max. P | 0.812496 |
| Location | 7,507,833 – 7,507,926 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 75.62 |
| Shannon entropy | 0.47512 |
| G+C content | 0.63564 |
| Mean single sequence MFE | -38.49 |
| Consensus MFE | -30.76 |
| Energy contribution | -31.30 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7507833 93 + 24543557 AAGCAACCUGGGACCGGCAGCCUGGGCGCAGGCGCAGACCCAAACA---ACUCAUAUACCAAGU---GCCCACGUUGGUGCUGGCAGUACCAAUGGGGC ........((((....((.(((((....)))))))...))))....---...............---((((.(((((((((.....))))))))))))) ( -36.60, z-score = -0.64, R) >droAna3.scaffold_13337 16292099 99 + 23293914 GAACAGUCUCCGGCCAGCAGCCUGGGCUCAGGCGUUUUUGCAUUCGCAGACGCAGACCCCGACUUUGAUUCACGUUGGUGGUGGCAGCACCAGCGGGGC .......(((((((((((.(((((....)))))((.(((((....))))).))....................))))))((((....))))..))))). ( -35.30, z-score = 0.16, R) >droEre2.scaffold_4784 21930779 93 - 25762168 AAGCAGCCUGCGACCGGCAGCCUGGGCGCAGGCGCAGACCCAAACC---ACUCAUGUUCAAGCU---GCCCACGUUGGUGCUGGCAGCACCAAUGGGGC .(((.(((((((.((((....)))).)))))))(((((........---..)).)))....)))---((((.(((((((((.....))))))))))))) ( -44.70, z-score = -1.74, R) >droYak2.chr3L 8111140 93 + 24197627 AAACAGCCUGCGACCGGCAGCCUGGGCGCAGGCGCAGACCCAAACC---ACUCAUGUUCAAGCU---GCCCACGUUGGUGCUGGCAGCACCAAUGGGGC .....(((((((.((((....)))).))))))).............---...............---((((.(((((((((.....))))))))))))) ( -42.50, z-score = -1.59, R) >droSec1.super_2 7437579 93 + 7591821 AAGCAGCCUGGGACCGGCAGCCUGGGCUCAGGCGCAGACCCAAACC---ACUCAUAUUCCAAGU---GCCCACGUUGGUGCUGGCAGUACCAAUGGGGC ..((.(((((((.((((....)))).)))))))))...........---...............---((((.(((((((((.....))))))))))))) ( -40.30, z-score = -1.30, R) >droSim1.chr3L 7022345 93 + 22553184 AAGCAGCCUGGGACCGGCAGCCUGGGCGCAGGCGCAGACCCAAACC---ACUCAUAUUCCAAGU---GCCCACGUUGGUGCUGGCAGUACCAAUGGGGC ..((.(((((.(.((((....)))).).)))))))...........---...............---((((.(((((((((.....))))))))))))) ( -38.40, z-score = -0.51, R) >droWil1.scaffold_180698 6053531 86 + 11422946 AGUGAGUCCGGAAGCGGCGGCCA----UCAGGC---CACCUCGGCG---AUACAGCAGGCAGCA---UCCUUCGUUGGUCGUGGCAGCACCAAUGGGGG .(((.(.((((....((.((((.----...)))---).))))))).---.))).((.....)).---.(((((((((((.((....))))))))))))) ( -31.60, z-score = -0.02, R) >consensus AAGCAGCCUGGGACCGGCAGCCUGGGCGCAGGCGCAGACCCAAACC___ACUCAUAUUCCAACU___GCCCACGUUGGUGCUGGCAGCACCAAUGGGGC .....(((((((.((((....)))).)))))))..................................((((.(((((((((.....))))))))))))) (-30.76 = -31.30 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:41 2011