| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,468,454 – 7,468,547 |
| Length | 93 |
| Max. P | 0.966912 |
| Location | 7,468,454 – 7,468,547 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 77.06 |
| Shannon entropy | 0.42337 |
| G+C content | 0.52264 |
| Mean single sequence MFE | -34.15 |
| Consensus MFE | -19.34 |
| Energy contribution | -20.48 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7468454 93 - 24543557 CUAGUUAUUCACAAGUGCUAAGCCGCAAGCUAUUCAAGUGGCGGGAAGAGGACGAGGUCCUCGAUG---------UUCUUCAAGUCCU-GCCACAUGUGGCUG-- .((((...........))))(((((((.(.....)..(((((((((.((((((...))))))((..---------....))...))))-))))).))))))).-- ( -35.30, z-score = -3.00, R) >droSim1.chr3L 6988417 93 - 22553184 CUAGUUAUUUACAAGUGCUAAGCCGCAAGAUAUCCAAGUGGCGGGAAGAGGACGAGGUCCUCGAGG---------UCCUUCGAGUCCU-GCCACAUGUGGCUG-- .((((...........))))(((((((.(.....)..(((((((((.((((((...))))))(((.---------...)))...))))-))))).))))))).-- ( -36.70, z-score = -3.06, R) >droSec1.super_2 7399329 92 - 7591821 CUAGUUAUUUAGAAGUGCUAAGCCGCAAGAUAUCCAAGUGGC-GGAAGAGGACGGGGUCCUCGAGG---------UCCUUCGAGUCCU-GCCACAUGUGGCUG-- ((((....))))........(((((((.(.....)..(((((-((..((((((...))))))(((.---------...))).....))-))))).))))))).-- ( -32.00, z-score = -1.43, R) >droYak2.chr3L 8073375 102 - 24197627 CUAGUUAUUUACAAGUGCUAAGCCGCAAGAUAUUCAAGUGGCGGAAAGAGGAAGAGGUCCUCGAGGUUCUCGAGGUCCUUCGAGUCCU-GCCACAUGUGGCUG-- .((((...........))))(((((((.(.....)..((((((((..((.....(((.(((((((...))))))).)))))...))).-))))).))))))).-- ( -39.10, z-score = -3.26, R) >droEre2.scaffold_4784 21895430 102 + 25762168 CUAGUUAUUUACAAGUGCUAAGCCGCAAGAUAUUCAAGUGGCGGAGAGAGGACGAGCUCCUCGAGGACCUCGAGCUCCUUCGAGUCCU-GCCACAUGUGGCUG-- .((((...........))))(((((((.(.....)..(((((.....(((((.....))))).(((((.(((((....))))))))))-))))).))))))).-- ( -38.20, z-score = -2.29, R) >droAna3.scaffold_13337 16257112 96 - 23293914 UUUGUUCUUUACGAGAUCGAAGCCGCAAGAUGUUCAAGUAGCCGUCUUGGGCUACAUGGGUUACCU---------CCUUGCCUCUCCUCGCCACAUAUGUAUGUG ...........((((...((.(..(((((........((((((......))))))..((....)).---------.)))))..))))))).(((((....))))) ( -23.60, z-score = -0.63, R) >consensus CUAGUUAUUUACAAGUGCUAAGCCGCAAGAUAUUCAAGUGGCGGGAAGAGGACGAGGUCCUCGAGG_________UCCUUCGAGUCCU_GCCACAUGUGGCUG__ ....................(((((((.(.....)..(((((.....(((((.....)))))((((...........))))........))))).)))))))... (-19.34 = -20.48 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:39 2011