| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,456,303 – 7,456,397 |
| Length | 94 |
| Max. P | 0.510097 |
| Location | 7,456,303 – 7,456,397 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.82 |
| Shannon entropy | 0.48189 |
| G+C content | 0.45512 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -13.97 |
| Energy contribution | -13.98 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7456303 94 - 24543557 AUUUAGUUGCAUAUUUUGCGGCGCCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCAGACC-------CUGCUGGACCGCAUCCACGCCCAGUG----------- .....(((.....(((((.((((((....))).))).))))).(((((...........)))))))).-------..(((((...((......))))))).----------- ( -23.00, z-score = -0.86, R) >droSim1.chr3L 6977244 94 - 22553184 AUUUAGUUGCAUAUUUUGCGGCGCCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCAGACC-------CUACUGGACCGCAUCCACGCCCAGUG----------- .....(((.....(((((.((((((....))).))).))))).(((((...........)))))))).-------.((((((...((......))))))))----------- ( -22.90, z-score = -1.40, R) >droSec1.super_2 7387464 97 - 7591821 AUUUAGUUGCUUAUUUUGCGGCGCCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCAGACC----CUGCUGCUGGACCGCAUCCACGCCCAGUG----------- ........((...(((((.((((((....))).))).))))).(((((...........)))))....----..)).(((((...((......))))))).----------- ( -23.80, z-score = -0.65, R) >droYak2.chr3L 8061358 94 - 24197627 AUUUUGUUGCAUAUUUUGCGGCGCCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCAGACC-------CUGCUGGACCGCAUCCACGCCCAGUG----------- ((((..((.(((.(((((.((((((....))).))).))))))))))..))))...............-------..(((((...((......))))))).----------- ( -24.90, z-score = -1.30, R) >droEre2.scaffold_4784 21880143 94 + 25762168 AUUUUGUUGCAUAUUUUGCGGCGCCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCAGACC-------AUGCUGGACCGCAUCCACGCCCAGUG----------- ((((..((.(((.(((((.((((((....))).))).))))))))))..))))...............-------..(((((...((......))))))).----------- ( -24.90, z-score = -1.11, R) >droAna3.scaffold_13337 16246306 88 - 23293914 AUUUUGUUGCAUAUUUUGUGGCGUCGAAUGGCAGUAACAAAAAUGAAUGAAAUCGUAAAAUUUG-------GACCGCACUGGACCGCAUCCAGUA----------------- ((((..((.(((.((((((.(((((....))).)).)))))))))))..))))...........-------......((((((.....)))))).----------------- ( -17.80, z-score = 0.48, R) >dp4.chrXR_group6 1456394 101 - 13314419 AUUUUGUUACAUAUUUUGCGGCGUCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUUCUCCCUCCACUCGGACCGGACCGCAGUCAGAGAGAGAG----------- ((((..((.(((.(((((.((((((....))).))).))))))))))..)))).........((((.(((.((((((......))).)))..))).)))).----------- ( -28.40, z-score = -2.51, R) >droPer1.super_12 2145901 101 - 2414086 AUUUUGUUACAUAUUUUGCGGCGUCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUUCCCCCUCCACUCGGACCGGACCGCAGUCAGAGAGAGAG----------- ((((..((.(((.(((((.((((((....))).))).))))))))))..)))).........((.(.(((.((((((......))).)))..))).).)).----------- ( -23.60, z-score = -1.10, R) >droWil1.scaffold_180698 5991861 108 - 11422946 AUUUUGUUGCAUAUUUUGUGGCAUCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCGGAC----AAGCAAGCGAAGCCGCUGCAGCAGCCGCAACGCCAGCAGCG .....(((((...(((((((((...........))))))))).(((((...........)))))...----......(((..((.((((...)))).))..)))..))))). ( -30.90, z-score = -0.49, R) >droMoj3.scaffold_6680 3794944 96 - 24764193 AUUUUGUUGCAUAUUUUGCGGCGUCGAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUGCAGAC----ACGCCGG-ACAGCCAGCCAGCCGGCCGAAG----------- ....((((((((.(((((.((((((....))).))).)))))((((......))))...))))).))----).(((((-...(....)...))))).....----------- ( -26.80, z-score = -0.57, R) >droVir3.scaffold_13049 5440542 89 - 25233164 AUUUUGUUGCAUAUUUUGUGGCGUCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUCCAGAC----ACGCCGG-ACAGCCACAGCAGCG------------------ .....(((((...((((((((((((....))).)))))))))((((......))))....(((.(..----...).))-)........))))).------------------ ( -24.30, z-score = -1.58, R) >droGri2.scaffold_15110 10993982 89 + 24565398 AUUUUGUUGCAUAUUUUGUGGCGUAAAAUAGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCAGAC----ACGCCGG-ACAGCCACAGCAGCG------------------ .....(((((...(((((((((((......)).))))))))).(((((...........)))))...----.....((-....))...))))).------------------ ( -22.70, z-score = -1.85, R) >consensus AUUUUGUUGCAUAUUUUGCGGCGUCAAAUGGCAGCCACAAAAAUGAAUGAAAUCGUAAAAUUCAGACC___AC_CCGGCUGGACCGCAUCCACGCCCAGUG___________ ((((..((.(((.(((((.((((((....))).))).))))))))))..))))........................................................... (-13.97 = -13.98 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:37 2011