| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,438,767 – 7,438,895 |
| Length | 128 |
| Max. P | 0.683494 |
| Location | 7,438,767 – 7,438,895 |
|---|---|
| Length | 128 |
| Sequences | 15 |
| Columns | 128 |
| Reading direction | forward |
| Mean pairwise identity | 81.48 |
| Shannon entropy | 0.42884 |
| G+C content | 0.53978 |
| Mean single sequence MFE | -44.04 |
| Consensus MFE | -25.42 |
| Energy contribution | -24.65 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7438767 128 + 24543557 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCAUUCGAUGCUCGGAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACAUUAGGUAAGGAAUUAGGUCU ((((((((.(((.(((((((((((...)))))))))))........(((.....)))....)))))))))))...(((((((((.(.....).)))))).)))((((.((((........)))))))) ( -51.00, z-score = -3.07, R) >droSim1.chr3L 6957921 128 + 22553184 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCAUUCGAUGCCCGGAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACAUUAGGUAAGGUAUUAUGUCU ((((((((.(((.(((((((((((...)))))))))))........(((.....)))....)))))))))))...(((((((((.(.....).)))))).)))((((((.............)))))) ( -52.12, z-score = -3.31, R) >droSec1.super_2 7370032 128 + 7591821 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCAUUCGAUGCCCGGAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACAUUAGGUAAGGAAUUAUGUCU ((((((((.(((.(((((((((((...)))))))))))........(((.....)))....)))))))))))...(((((((((.(.....).)))))).)))((((((.............)))))) ( -52.12, z-score = -3.38, R) >droYak2.chr3L 8043449 127 + 24197627 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCAUUCGAUGCUCGGAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUGCUCAGCCAGACAUUAGGUAAGGAUAUGUGUC- ((((((((.(((.(((((((((((...)))))))))))........(((.....)))....)))))))))))...((((((.((.(.....).)).))).))).(((((...((....))..)))))- ( -46.50, z-score = -1.54, R) >droEre2.scaffold_4784 21859579 128 - 25762168 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCAUUCGAUGCUCGGAACGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACAUUAGGUAAGGAUUUGGGUCU ((((((.......(((((((((((...)))))))))))((((....(((.....))).....))))))))))...(((((((((.(.....).)))))).)))((((.((((((....)))))))))) ( -51.70, z-score = -2.98, R) >droAna3.scaffold_13337 16228660 122 + 23293914 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCUUUUGUGCAGUUCACCAACCCGUUCGAUGCCCGCAAUGCCUGCCACGGAGAGGAUGGAAAGACGGUCCUUAGUCAGACCUUAGGUGAGUGGAC------ .........(((((((((((((((...))))))))))...(((((...((((((....((.(((.....)))...))...))))))......((((........))))...)))))))))).------ ( -40.20, z-score = -0.76, R) >dp4.chrXR_group6 1436618 128 + 13314419 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAACCCCUUCGAUGCCCGCAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACACUAGGUGAGUACUGCUGGCC ((((((((.....(((((((((((...)))))))))))..................((....))))))))))...(((((((((.(.....).)))))).)))........(((.((.....)).))) ( -49.40, z-score = -1.39, R) >droPer1.super_12 2126322 128 + 2414086 GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAACCCCUUCGAUGCCCGCAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACCCUAGGUGAGUACUGCUGGCC ((((((((.....(((((((((((...)))))))))))..................((....))))))))))...(((((((((.(.....).)))))).)))........(((.((.....)).))) ( -49.40, z-score = -1.34, R) >droWil1.scaffold_180698 5967125 117 + 11422946 UCAGGCAUUUCCAUGCAUAAGGGCUAUGCCUUUGUCCAGUUUACCAAUCCGUUCGAUGCGCGUAAUGCCUGCCAUGGCGAGGAUGGUAAAACGGUUCUCAGCCAAACGCUAGGUGAG----------- .((((((((...((((((((((((...))))))))...............((.....))))))))))))))...((((((((((.(.....).)))))).)))).............----------- ( -35.50, z-score = -0.45, R) >droVir3.scaffold_13049 5418483 118 + 25233164 GCAGGCAUCUCCAUGCACAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCCUUCGAUGCCCGCAACGCCUGUCACGGCGAGGAUGGCAAGACGGUGCUCAGCCAGACCUUGGGUGAGU---------- ((.((((((....(((((((((((...)))))))))))(....)..........)))))).))..((((((((..((((((.((.(.....).)).))).))).)))...)))))...---------- ( -46.60, z-score = -1.32, R) >droMoj3.scaffold_6680 3772734 123 + 24764193 GCAGGCAUCUCGAUGCACAAGGGCUACGCCUUUGUGCAGUUCACCAAUCCCUUCGACGCCCGCAACGCCUGUCACGGCGAGGACGGCAAGACGGUGCUCAGCCAGACCCUAGGUGAGUCGCCU----- ..((((.......(((((((((((...)))))))))))(((((((............(((..(..((((......))))..)..))).....(((.....)))........)))))).)))))----- ( -47.70, z-score = -1.33, R) >droGri2.scaffold_15110 10976034 117 - 24565398 GCAGGCAUCUCCAUGCACAAAGGCUAUGCCUUUGUGCAGUUCACCAACCCGUUCGAUGCCCGCAACGCCUGUCACGGCGAGGAUGGCAAAACAGUGCUCAGCCAAACACUAGGUGAG----------- ((.((((((....(((((((((((...)))))))))))(((....)))......)))))).))..(((((((...((((((.(((......)).).))).)))....)).)))))..----------- ( -45.10, z-score = -2.86, R) >anoGam1.chr2L 21009967 128 - 48795086 ACAGGAAUUUCCAUGCAUAAAGGAUACGCGUUUGUACAGUUCACUAAUCCAUUCGAUGCCCGGAACGCUUGCCACGGUGAGGAUGGACGAACGGUGCUGAGUCAAACUUUAGGUAAGUGGUUCAGUAU ...((.....))................(((((((.((((((....(((.....))).....)))).((..(....)..))..)).)))))))(((((((..((.((.....))...))..))))))) ( -31.20, z-score = 0.71, R) >apiMel3.Group14 4335994 121 + 8318479 -CAGGAAUAUCUAUGCACAAAGGCUAUGCAUUCGUGCAAUUCACAAAUCCCUUUGAUGCCCGGAGCGCCUGCCUCGGCGAAGAUGGCCGCACCGUUCUUAGCCAGAUACUCGGUAAGUAAUU------ -...((.(((((........((((..(((.((((.(((..(((..........)))))).)))))))...)))).(((.(((((((.....))).)))).)))))))).))...........------ ( -30.10, z-score = 0.70, R) >triCas2.ChLG3 31486099 117 + 32080666 GCAGGAAUAUCGAUGCACAAAGGAUACGCUUUCGUGCAGUUUACGAAUCCUUUUGAUGCUAGAAGUGCCUGUUUGGGAGAGGAUGGCAGGACUGUUCUCAGCCAAAUCUUAGGUGAG----------- (((((.((.((...(((((((((((......(((((.....))))))))).)))).)))..)).)).)))))((((..((((((((.....))))))))..))))............----------- ( -32.00, z-score = -0.10, R) >consensus GCAGGCAUAUCCAUGCAUAAGGGCUAUGCCUUUGUGCAGUUCACCAAUCCAUUCGAUGCCCGGAAUGCCUGCCACGGCGAGGAUGGCAAGACGGUCCUCAGCCAGACAUUAGGUGAGUA_UU__G___ ...((........(((((((((((...)))))))))))..........))......((((.....((((......)))).(..((((.............))))..)....))))............. (-25.42 = -24.65 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:32 2011