Locus 6528

Sequence ID	dm3.chr3L
Location	7,432,896 – 7,432,981
Length	85
Max. P	0.588228

overview

Window 8

Location	7,432,896 – 7,432,981
Length	85
Sequences	4
Columns	87
Reading direction	forward
Mean pairwise identity	58.71
Shannon entropy	0.66557
G+C content	0.42359
Mean single sequence MFE	-14.52
Consensus MFE	-9.92
Energy contribution	-10.98
Covariance contribution	1.06
Combinations/Pair	1.48
Mean z-score	0.07
Structure conservation index	0.68
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.20
SVM RNA-class probability	0.588228
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 7432896 85 + 24543557
AAUGUCUGCCUCGUACUUCCACAAUCUGAGUAACGGGUAUCUGAUAGUCGAGCA--ACUCAACUAUAACCUUCUCUCUUAUACUGCU
......((((.(((((((.........)))).)))))))....(((((.(((..--.))).)))))..................... ( -12.80, z-score =  -0.20, R)
>dp4.chr2 17975143 80 + 30794189
-----AUUCCCCUUGAUAUCCCCAACUGAACACGGGGUACAUCAUAGUCGAGUC--ACACGACUAAAACGUUCCCUUAUGUACGGUU
-----..................(((((.(((.((((.((....((((((....--...))))))....)).))))..))).))))) ( -18.00, z-score =  -0.75, R)
>droPer1.super_3 118503 80 + 7375914
-----AUUCCCCCUGAUAUCCCCAACUGAACACGGGGUACAUCAUAGUCGAGUC--ACACGACUAAAACGUUCCCUUAUGUACGGUU
-----..................(((((.(((.((((.((....((((((....--...))))))....)).))))..))).))))) ( -18.00, z-score =  -0.68, R)
>droGri2.scaffold_15112 658308 84 + 5172618
AAGGUCUGCCAACU--UGUCGCAAAAAAGGAAAGGGCUGU-UAAUAUUUGAAUUUUGCUCAAGUGAAACUUAUAUUUUAUCAAUGCU
..((....))....--....(((......((((.....((-(..(((((((.......))))))).))).....)))).....))). (  -9.30, z-score =   1.90, R)
>consensus
_____AUGCCCCCUGAUAUCCCAAACUGAACAAGGGGUACAUCAUAGUCGAGUC__ACACAACUAAAACGUUCCCUUAUGUACGGCU
.......................(((((.((((((((.......((((((((.....))))))))........)))))))).))))) ( -9.92 = -10.98 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:30 2011