| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,429,963 – 7,430,061 |
| Length | 98 |
| Max. P | 0.909718 |
| Location | 7,429,963 – 7,430,061 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 61.72 |
| Shannon entropy | 0.73703 |
| G+C content | 0.47520 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -13.45 |
| Energy contribution | -16.93 |
| Covariance contribution | 3.48 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7429963 98 + 24543557 AUCAAGGUUUUUAAAGAGGCGGG-UUUUCCCAGUGAAAUUGGGAUGUA---UACCUGGU------ACACCUGGUACUUCC---AAUCCCUGGACUUCGCUUCCGGCUCGUU ...............(((.((((-....)))((((((...(((((...---((((.((.------...)).)))).....---.))))).....))))))...).)))... ( -28.20, z-score = -0.48, R) >droEre2.scaffold_4784 21850621 108 - 25762168 -AUCGUGGUUAAAAAGAGGCGGUCUUAUGCCAGUGAAAUUGGGGAGUACCCUAGGUGCUUGCCCUACACCUGGUACUUCCAAUAA--CCUGGUGCACGCUUCCUGCUGACU -.....(((((..(.((((((((.....(((((.(..((((((.((((((..(((((.........)))))))))))))))))..--)))))))).)))))).)..))))) ( -37.50, z-score = -1.82, R) >droYak2.chr3L 8035618 107 + 24197627 -AUCUUGGUUAAACAGAGGCGGUUCUUUCGCAAUGAAAUUGGGGAGUA---UAGGUGCUUGCCCUACACCUGGUACUACUUCCAAUCCCUGGACUUCGCUUCCUGCCAACU -...(((((......((((((((((((((.....))))...(((((((---((((((.........))))))....))))))).......))))..))))))..))))).. ( -28.40, z-score = -0.20, R) >droSec1.super_2 7361300 97 + 7591821 --------UUUUGAAGAGGCGGGAUUUUCCCAGAGAAAUUGGGAAGUU---UAGGUGCUUGCCCGACACCUGGUACUUCC---AAUCCCUGGACUUCGCAUCCUGCUGGCU --------......((.((((((((....((((.((.....(((((((---(((((((......).))))))).))))))---..)).)))).......))))))))..)) ( -33.20, z-score = -1.24, R) >droSim1.chr3L 6947710 97 + 22553184 --------UUUUGAAGAGGCGGGGUUUUCCCAGAGAAAUUGGGAAGUU---UAGGUGCUUGCCCGACACCUGGUACUUUU---AAUCCCUGGACUUCGCAUCCUGCUGGCU --------......((.((((((((....((((.((.....(((((((---(((((((......).))))))).))))))---..)).)))).......))))))))..)) ( -28.00, z-score = 0.42, R) >dp4.chr2 14853141 104 + 30794189 -GCCAAGAUUUGAAUAUAAAUGUUAUGUGUUAUUGGGAU-ACAUAUUAGUAUUCCUGAAAUCAUUUUUGGUGGUGCUUCC-----UAUUUGGGAAACGCUUCUGUCUUGGC -((((((((..(((.........((((((((.....)))-)))))...((((..(..(((....)))..)..))))((((-----(....)))))....))).)))))))) ( -29.80, z-score = -3.27, R) >consensus ___C__G_UUUUAAAGAGGCGGGUUUUUCCCAGUGAAAUUGGGAAGUA___UAGGUGCUUGCCCUACACCUGGUACUUCC___AAUCCCUGGACUUCGCUUCCUGCUGGCU ...............(((((((((.....((((.((.....(((((((...((((((.........)))))).))))))).....)).)))).)))))))))......... (-13.45 = -16.93 + 3.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:30 2011