| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,406,153 – 7,406,251 |
| Length | 98 |
| Max. P | 0.721304 |
| Location | 7,406,153 – 7,406,251 |
|---|---|
| Length | 98 |
| Sequences | 9 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 77.56 |
| Shannon entropy | 0.43692 |
| G+C content | 0.52458 |
| Mean single sequence MFE | -35.12 |
| Consensus MFE | -19.35 |
| Energy contribution | -19.67 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7406153 98 - 24543557 -AAGCUCAGCGGCAUGCCAAGGCAA-CAAAAUGCCAUUUGUCAAGCGGUGUCCCACCGAGCGGAUUUCUUCGGGUCA-GGCUCAGGGGAAAUCCUUGAUAU---------------- -..((((.((((....))..((((.-.....)))).........))((((...))))))))(((((((((((((...-..))).)))))))))).......---------------- ( -36.80, z-score = -2.31, R) >droEre2.scaffold_4784 21827021 98 + 25762168 -AAGCUCAGCGGCAUGCCAAGGCAA-CAAAAUGCCAUUUGUCAAGCGGUGUCCCACCGAGCGGAUUUCUUCGGUUCG-GGCUCAGGGGAAAUCCUUGAUAU---------------- -.........(((((.....(....-)...)))))...(((((((.(((.((((.((((((.((.....)).)))))-)......)))).)))))))))).---------------- ( -36.20, z-score = -2.06, R) >droYak2.chr3L 8010429 98 - 24197627 -AAGCUCAGCGGCAUGCCAAGGCAA-CAAAAUGCCAUUUGUCAAGCGGUGUCCCACCGAGCGGAUUUCUUCGGGUCA-GGCUCAGGGGAAAUCCUUGAUAU---------------- -..((((.((((....))..((((.-.....)))).........))((((...))))))))(((((((((((((...-..))).)))))))))).......---------------- ( -36.80, z-score = -2.31, R) >droSec1.super_2 7336337 98 - 7591821 -AAGCUCAGCGGCAUGCCAAGGCAA-CAAAAUGCCAUUUGUCAAGCGGUGUCCCACCGAGCGGAUUUCUUCGGGUCA-GGCUCAGGGGAAAUCCUUGAUAU---------------- -..((((.((((....))..((((.-.....)))).........))((((...))))))))(((((((((((((...-..))).)))))))))).......---------------- ( -36.80, z-score = -2.31, R) >droSim1.chr3L 6921841 98 - 22553184 -AAGCUCAGCGGCAUGCCAAGGCAA-CAAAAUGCCAUUUGUCAAGCGGUGUCCCACCGAGCGGAUUUCUUCGGGUCA-GGCUCAGGGGAAAUCCUUGAUAU---------------- -..((((.((((....))..((((.-.....)))).........))((((...))))))))(((((((((((((...-..))).)))))))))).......---------------- ( -36.80, z-score = -2.31, R) >dp4.chrXR_group6 1401177 109 - 13314419 CCAGCUCAGCGGCAUGCCAGGGCCA-CAGAAUGCCAUUUGUCAAGCGUUCUCCCGCCGAGCAGAUUUCUUCGGGUCAGGGCUUUGGGGCCUGAUAUCAUUCACAGAGAAG------- ((.((((.((((....)).(((...-.(((((((..........)))))))))))).)))).((.....))))((((((.(.....).))))))................------- ( -34.80, z-score = -0.04, R) >droPer1.super_12 2090597 109 - 2414086 CCAGCUCAGCGGCAUGCCAGGGCCA-CAGAAUGCCAUUUGUCAAGCGUUCUCCCGCCGAGCAGAUUUCUUCGGGUCAGGGCUUUGGGGCCUGAUAUCAUUCACAGAGAAG------- ((.((((.((((....)).(((...-.(((((((..........)))))))))))).)))).((.....))))((((((.(.....).))))))................------- ( -34.80, z-score = -0.04, R) >droAna3.scaffold_13337 16199470 113 - 23293914 -AAGCUCAGCGGCAUGCCAAGGCAA-CAAAAUGCCAUUUGUCAACCGCUGUCCCACCGAGCAGAUUUCUUCGGGUCA-GGCCCGGGGGAUAUACUUCAUAUACACACAUGUAUAUG- -.....((((((..((.(((((((.-.....))))..))).)).))))))((((.(((.((.....((....))...-.)).))))))).......((((((((....))))))))- ( -38.50, z-score = -2.94, R) >droWil1.scaffold_180698 5922361 115 - 11422946 AAAGCUCAGCGGCAUGCCAAGGCAACCAAAAUGCCAUUUGUCAAAUGUUGUACUGGAGAG-AGAUUUCUUUGGGUUG-ACGACAUAAACUCUCUCUCACUCUCACUCUAUACAUAAG ..((..((((((....))..((((.......))))...........))))..)).(((((-((((((..(((.....-.)))...))).)))))))).................... ( -24.60, z-score = -0.27, R) >consensus _AAGCUCAGCGGCAUGCCAAGGCAA_CAAAAUGCCAUUUGUCAAGCGGUGUCCCACCGAGCGGAUUUCUUCGGGUCA_GGCUCAGGGGAAAUCCUUGAUAU________________ ...(((..((((....))..((((.......))))....))..)))((...(((.(.((((.....((....)).....)))).))))....))....................... (-19.35 = -19.67 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:29 2011