| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,349,781 – 7,349,881 |
| Length | 100 |
| Max. P | 0.611863 |
| Location | 7,349,781 – 7,349,881 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 77.67 |
| Shannon entropy | 0.43079 |
| G+C content | 0.37832 |
| Mean single sequence MFE | -19.13 |
| Consensus MFE | -14.51 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7349781 100 + 24543557 CAUUUCUAAUAAAAGAUGGCGACAUGUAGCAUCAGUACCGCCAGCUAUCGAUAGUUCGAUUGGUUUCGUAUCUUGUCAUCUCUA-UAUAAACUAUCUUUAA ...........((((((((....((((((...((((((.((((...(((((....)))))))))...))))..))......)))-)))...)))))))).. ( -18.60, z-score = -0.95, R) >droSim1.chr3L 6867218 100 + 22553184 CAUUUCUAAUAAAAGAUGGCGACAUAUAGCAUCAGUACCGCCAGCUAUCGAUAGUUCGAUUGGUUUCGUGUCUUGUCAUCUCUA-UAUAAACUAUCUUUAA ...........((((((((....((((((...(((.((((..(((((((((....)))).))))).)).)).)))......)))-)))...)))))))).. ( -19.60, z-score = -1.31, R) >droSec1.super_2 7274432 100 + 7591821 CAUUUCUAAUAAAAGAUGGCGACAUAUAGCAUCAGUACCGCCAGCUAUCGAUAGUUCGAUUGGUUUCGUGUCUUGCCAUCUCUA-UAUAAACUAUCUAUAA .............((((((((((((...((....))...((((...(((((....)))))))))...)))))..)))))))...-................ ( -21.80, z-score = -1.82, R) >droYak2.chr3L 7954610 100 + 24197627 CAUUUCUAAUAAAAGAUGGCGACAUAUAGCAUCAGUACAGCCAGUUAUCGAUAGUUCGAUUGGUUUCGUAUCUUGUCAUCUCUA-UACAUACUAUCUUGAA .............(((((((((.((((.((....))..(((((...(((((....))))))))))..)))).)))))))))...-................ ( -19.20, z-score = -0.93, R) >droEre2.scaffold_4784 21770271 98 - 25762168 CAUUUCUAAUAAAAGAUGGCGACAUAUAGCAUCAGUACCGCCAGUUAUCGAUAGUUCGAUUAGUUUCGCAUCUUGUCAUCUCUA-UACU--CUAUCACAGA .............(((((((((......((....))...((.((..(((((....)))))....)).))...)))))))))...-....--.......... ( -14.40, z-score = 0.22, R) >droMoj3.scaffold_6680 5686336 84 + 24764193 ---------CAAAAGAUGGCGGAAUG--GCUUUGGCGUUGCCACCGGUUGACA------CUGGUUCCUAACAGUGCCAUUUUGAGUAUUAAAUAGGUUCAA ---------.....((((.(((((((--((...(((...)))((((((....)------)))))..........)))))))))..))))............ ( -21.20, z-score = -0.14, R) >consensus CAUUUCUAAUAAAAGAUGGCGACAUAUAGCAUCAGUACCGCCAGCUAUCGAUAGUUCGAUUGGUUUCGUAUCUUGUCAUCUCUA_UAUAAACUAUCUUUAA .............(((((((((.((((.((....))...((((...(((((....)))))))))...)))).))))))))).................... (-14.51 = -15.10 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:28 2011