| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,333,762 – 7,333,876 |
| Length | 114 |
| Max. P | 0.701134 |
| Location | 7,333,762 – 7,333,876 |
|---|---|
| Length | 114 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.96 |
| Shannon entropy | 0.40079 |
| G+C content | 0.61037 |
| Mean single sequence MFE | -47.38 |
| Consensus MFE | -25.42 |
| Energy contribution | -25.73 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7333762 114 - 24543557 AUUUACCCUAAAG------CCAUCCAUGAUGCGGUCACGCAGGAACGGCGGCGGCGGUGGUGGCGGCGGAUACGGGUCACGACCGUACAUGCGAUCUCUGUAGCCGCCGGCGCUGAGGGG .....((((...(------((.(((....((((....)))))))..((((((.((((.(((.(((...(.(((((.......)))))).))).))).)))).)))))))))....)))). ( -54.90, z-score = -2.34, R) >droGri2.scaffold_15110 19101781 108 + 24565398 AUUUACCCUAAAG------CCGUCCAUAAUGCGAUCACGCAGGAAUGGC------GGCGGUGGUGGCGGAUACGGAUCACGACUGUACAUGCGAUCUCUGUAGCCACCGGCGCUUAGAGG .....((((((.(------(((.((((..((((....))))...)))))------)))(.(((((((..(((.(((((.((........)).))))).))).))))))).)..)))).)) ( -43.50, z-score = -2.51, R) >droMoj3.scaffold_6680 5669255 111 - 24764193 AUUUACCCUAAAA------CCGUCCAUUAUGCGAUCACGCAGGAAUGGCGGCGGUGGCGGUGGCGGCGGAUACGGAUCACGACUGUACAUGCGAUCUCUGUA---GCCGGCGCUCAGCGG .............------(((.(((((.((((....))))..))))))))((.(((((.((((.(((((....((((.((........)).))))))))).---)))).))).)).)). ( -41.60, z-score = -0.67, R) >droVir3.scaffold_13049 7414745 114 - 25233164 AUUUACCCUAAAG------CCGUCCAUUAUGCGAUCACGCAGGAAUGGCGGCGGUGGCGGUGGCGGAGGAUACGGAUCACGACUGUACAUGCGAUCUCUGUAGCCGCCGGCGCUCAGCGG ......((....(------(((.(((((.((((....))))..)))))))))(.(((((.((((((...(((.(((((.((........)).))))).)))..)))))).))).)).))) ( -49.10, z-score = -2.04, R) >droPer1.super_65 228761 114 - 397436 AUUUACCCUAAAG------CCAUCCAUAAUGCGAUCACGCAGGAAUGGCGGCGGAGGUGGUGGUGGCGGAUAAGGAUCACGACCGUACAUACGAUCUCUGUAGCCACCGGCACUGAGCGG ......((....(------((((((....((((....)))))).))))).((...((((.(((((((..(((..((((..............))))..))).))))))).))))..)))) ( -43.44, z-score = -2.10, R) >dp4.chrXR_group8 3424307 114 - 9212921 AUUUACCCUAAAG------CCAUCCAUAAUGCGAUCACGCAGGAAUGGCGGCGGAGGUGGUGGUGGCGGAUAAGGAUCACGACCGUACAUACGAUCUCUGUAGCCACCGGCACUGAGCGG ......((....(------((((((....((((....)))))).))))).((...((((.(((((((..(((..((((..............))))..))).))))))).))))..)))) ( -43.44, z-score = -2.10, R) >droAna3.scaffold_13337 19777539 114 + 23293914 AUUUACCCUAAAG------CCAUCCAUGAUGCGGUCACGCAGGAACGGCGGCGGAGGUGGUGGCGGCGGAUACGGAUCGCGACCGUACAUACGGUCCCUGUAGCCGCCAGCACUUAGCGG ......((....(------((.(((....((((....)))))))..))).((..(((((.(((((((...(((((...(.((((((....))))))))))))))))))).))))).)))) ( -49.20, z-score = -1.79, R) >droEre2.scaffold_4784 21754479 114 + 25762168 AUUUACCCUAAAG------CCAUCCAUGAUGCGGUCACGCAGGAACGGCGGCGGGGGUGGUGGCGGCGGAUACGGGUCACGACCGUACAUGCGAUCUCUGUAGCUGCCGGCACUGAGGGG .....((((...(------((.(((....((((....)))))))..((((((((((((.((.(((((((((....))).)).))))....)).))))))...)))))))))....)))). ( -48.10, z-score = -1.32, R) >droYak2.chr3L 7938609 114 - 24197627 AUUUACCCUAAAG------CCAUCCAUGAUGCGGUCACGCAGGAACGGCGGCGGCGGUGGUGGCGGCGGAUACGGGUCACGACCGUACAUGCGAUCUCUGUAGCCGCCGGCGCUGAGGGG .....((((...(------((.(((....((((....)))))))..((((((.((((.(((.(((...(.(((((.......)))))).))).))).)))).)))))))))....)))). ( -54.90, z-score = -2.34, R) >droSec1.super_2 7258536 114 - 7591821 AUUUACCCUAAAG------CCAUCCAUGAUGCGGUCACGCAGGAACGGCGGCGGCGGUGGUGGCGGCGGAUACGGGUCACGACCGUACAUGCGAUCUCUGUAGCCGCCGGCGCUGAGGGG .....((((...(------((.(((....((((....)))))))..((((((.((((.(((.(((...(.(((((.......)))))).))).))).)))).)))))))))....)))). ( -54.90, z-score = -2.34, R) >droSim1.chr3L 6850871 114 - 22553184 AUUUACCCUAAAG------CCAUCCAUGAUGCGGUCACGCAGGAACGGCGGCGGCGGUGGUGGCGGCGGAUACGGGUCACGACCGUACAUGCGAUCUCUGUAGCCGCCGGCGCUGAGGGG .....((((...(------((.(((....((((....)))))))..((((((.((((.(((.(((...(.(((((.......)))))).))).))).)))).)))))))))....)))). ( -54.90, z-score = -2.34, R) >apiMel3.Group14 48355 108 - 8318479 -CUUACUCCAAAGCGGCCACCACCCAUUAACCGAUCCCGAAGGAACGGUGGU---GGCGGCGGUGGAGGAUACGGAUCGCGUCCAAACAUUCGGUCUCUGUAUCCGUUUCUA-------- -....(((((..((.(((((((((.......((....)).......))))))---))).))..)))))((.((((((((.(.((........)).)..)).)))))).))..-------- ( -44.74, z-score = -2.96, R) >triCas2.ChLG8 9963907 95 - 15773733 AUGUACCCCAAAU------CGGCCCAUCAUCCGGUCGCGAAGGAAUGGAGGC---GGUGGCGGCGGCGGGUAUGGAUCCCUACCGAACAUUCGGUCGCGGAAGC---------------- ..((((((....(------((.((((((.((((....(....)..))))...---))))).).))).))))))...((((.(((((....))))).).)))...---------------- ( -33.20, z-score = 1.15, R) >consensus AUUUACCCUAAAG______CCAUCCAUGAUGCGGUCACGCAGGAACGGCGGCGGCGGUGGUGGCGGCGGAUACGGAUCACGACCGUACAUGCGAUCUCUGUAGCCGCCGGCGCUGAGCGG ...................((.((.....((((....)))).....)).))....((((.(((((((..(((.(((((..............))))).))).))))))).))))...... (-25.42 = -25.73 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:25 2011