Locus 6521

Sequence ID dm3.chr3L
Location 7,304,442 – 7,304,543
Length 101
Max. P 0.813462
window8979

overview

Window 9

Location 7,304,442 – 7,304,543
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 94.64
Shannon entropy 0.09095
G+C content 0.48899
Mean single sequence MFE -31.62
Consensus MFE -27.98
Energy contribution -28.02
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.77
SVM RNA-class probability 0.813462
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 7304442 101 - 24543557
GCGAGCUGGCCGUAAUAUUUUGAUGAUGUGGAUGCCUUGGGCGCAUUUAAUGACCACCGCUUCCUUAUCGUACCAAACUAUUAUGGCCACGUACACGAGUA
(.(.(((((((((((((.((((((((((.(((.((..(((...(((...))).)))..)).))).))))))..)))).))))))))))).)).).)..... ( -34.40, z-score =  -3.20, R)
>droSim1.chr3L 6820965 101 - 22553184
GCGAGCUGGCCGUAAUAUUUUGAUGAUGUGGAUGCCUCGGGCGCAUUUAAUGACCACCGCUUCCUUAUCGCACCAAACUAUUAUGGCCACGUACACGAGUA
(.(.(((((((((((((.((((.(((((.(((.((...((...(((...))).))...)).))).)))))...)))).))))))))))).)).).)..... ( -30.70, z-score =  -1.69, R)
>droSec1.super_2 7229365 101 - 7591821
GCAAGCUGGCCGUAAUAUUUUGAUGAUGUGGAUGCCUCGGGCGCAUCUAAUGACCACCGCUUCCUUAUCGCAGCAAACUAUUAUGGCCACGUACACGAGUA
....(((((((((((((.((((.(((((.(((.((...((...(((...))).))...)).))).)))))...)))).))))))))))).))......... ( -31.30, z-score =  -1.52, R)
>droYak2.chr3L 7908812 98 - 24197627
GCGAGCUGGCCGUAAUAUUUUGAUGAUGUGAAUGCCUCGGGCGCAUUUAAUG---ACCGCUUCCUUAUCGCGGCAAACUAUUAUGGCCACGUACACGAGUA
(.(.(((((((((((((.((((......((((((((....).)))))))...---.((((.........)))))))).))))))))))).)).).)..... ( -31.20, z-score =  -1.56, R)
>droEre2.scaffold_4784 21724684 98 + 25762168
GCGAACUGGCCGUAAUAUUUUGAUGAUGUGGAUGCCUCGGGCGCAUUUAAUG---ACCGCUUCCUUAUCGCGGCAAACUAUUAUGGCCACGUACACGAGUA
(.(.(((((((((((((.((((......((((((((....).)))))))...---.((((.........)))))))).))))))))))).)).).)..... ( -30.50, z-score =  -1.48, R)
>consensus
GCGAGCUGGCCGUAAUAUUUUGAUGAUGUGGAUGCCUCGGGCGCAUUUAAUGACCACCGCUUCCUUAUCGCAGCAAACUAUUAUGGCCACGUACACGAGUA
....(((((((((((((.((((.(((((.(((.((...((...(((...)))....)))).))).)))))...)))).))))))))))).))......... (-27.98 = -28.02 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:22 2011