| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,234,116 – 7,234,171 |
| Length | 55 |
| Max. P | 0.613140 |
| Location | 7,234,116 – 7,234,171 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 84.36 |
| Shannon entropy | 0.26796 |
| G+C content | 0.34909 |
| Mean single sequence MFE | -9.45 |
| Consensus MFE | -7.02 |
| Energy contribution | -7.06 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7234116 55 + 24543557 UACUACAUAUCCAUGGAACCGAUCAGUUAAACUGCUUAUUUCAUGGUAUUUUAGC ..(((.....((((((((..((.(((.....))).)).)))))))).....))). ( -11.60, z-score = -2.48, R) >droEre2.scaffold_4784 21652570 55 - 25762168 UACUACACAUCCAUGGCACUCUUCAGUUAAACUGCUUAUUUCGUGGUAUUUUAGG ..(((.....((((((.......(((.....)))......)))))).....))). ( -8.92, z-score = -1.48, R) >droYak2.chr3L 7834382 55 + 24197627 UACAACAUAUCCAUGGCAUUCUUUAGUUUAAGUGCUUAUUUCAUGAUAUUUUAGG .....(((......((((((..........))))))......))).......... ( -4.70, z-score = 0.26, R) >droSec1.super_2 7160330 55 + 7591821 UUCUACAUAUCCAUGGCACCGAUCAGUUAUUCUGUUUAUUCCAUGGUAUUUUAGC ..(((.....((((((.......(((.....)))......)))))).....))). ( -10.82, z-score = -2.24, R) >droSim1.chr3L 6746175 55 + 22553184 UACUACAUAUCCAUGGCACCGAUCAGUUAAUCUGUUUAUUCCAUGGUAUUUUAGC ..(((.....((((((.......(((.....)))......)))))).....))). ( -11.22, z-score = -2.09, R) >consensus UACUACAUAUCCAUGGCACCGAUCAGUUAAACUGCUUAUUUCAUGGUAUUUUAGC ..(((.....((((((.......(((.....)))......)))))).....))). ( -7.02 = -7.06 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:19 2011