| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,224,617 – 7,224,714 |
| Length | 97 |
| Max. P | 0.520076 |
| Location | 7,224,617 – 7,224,714 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.07 |
| Shannon entropy | 0.32578 |
| G+C content | 0.42083 |
| Mean single sequence MFE | -25.96 |
| Consensus MFE | -17.29 |
| Energy contribution | -16.91 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7224617 97 - 24543557 --------------------AGAAAUGGCCAUAAAUUAGAAAAGUUCGCCGCUGAUGC-GGACAAGUUGCCUUUGAUUUGCCAGUUUUG-UUCGCCAUUUUAUGGCCAUUUAAUGUGCU --------------------..(((((((((((((...(((.((..(.((((....))-)).((((((......))))))...)..)).-))).....)))))))))))))........ ( -28.50, z-score = -2.17, R) >droSim1.chr3L 6736048 97 - 22553184 --------------------AGAAAUGGCCAUAAAUUAGAAAAGUUCGCCGCUGAUGC-GGACAAGUUGCCUUUGAUUUGCCAGUUUUG-UUCGCCAUUUUAUGGCCGUUUAAUGUGCU --------------------..(((((((((((((...(((.((..(.((((....))-)).((((((......))))))...)..)).-))).....)))))))))))))........ ( -28.10, z-score = -1.94, R) >droSec1.super_2 7150764 97 - 7591821 --------------------AGAAAUGGCCAUAAAUUAGAAAAGUUCGCCGCUGAUGC-GGACAAGUUGCCUUUGAUUUGCCAGUUUUG-UUCGCCAUUUUAUGGCCGUUUAAUGUGCU --------------------..(((((((((((((...(((.((..(.((((....))-)).((((((......))))))...)..)).-))).....)))))))))))))........ ( -28.10, z-score = -1.94, R) >droEre2.scaffold_4784 21643440 95 + 25762168 ----------------------AAAUGGCCAUAAAUUAGAAAAGUUCGCCCCUGAUGC-GGACAAGUUGCCUUUGAUUUGCCAGUUUUG-UUCGCCAUUUUAUGGCCGUUUAAUGUGCC ----------------------(((((((((((((((((............)))))((-(((((((..((.........))....))))-)))))....))))))))))))........ ( -26.90, z-score = -2.45, R) >droWil1.scaffold_180698 7827801 117 - 11422946 CGGUGCCAACCAAAAACCAUACCGAUGGCCAUAAAUUAGAAAAGUUUACC-CUGAUGC-GGACAAGUUGCCUUUGAUUUGCCAGUUUUGCUUUGCCAUUUUAUGGCCGUUUAAUGUGCU .(((....)))......((((..((((((((((((.....(((((.....-(((..((-(((((((.....)))).))))))))....))))).....))))))))))))...)))).. ( -31.30, z-score = -1.81, R) >droVir3.scaffold_13049 9467531 88 + 25233164 ------------------------AUGGCCGUAAAUUAGAAAAGUUGCUC---GACGCGGGACAAGUUG-CUUUGAUUUGCCAGUUU---GCCAACGUUUUAUAGCCGUUUAAUGUGCU ------------------------(((((.((((((((((.((.((((((---(...)))).))).)).-.))))))))))..(((.---...)))........))))).......... ( -18.80, z-score = 0.76, R) >droMoj3.scaffold_6680 21057406 88 - 24764193 ------------------------ACGGUCGUAAAUUAGAAAAGUUGGCC---GACGCGGGACAAGUUG-CUUUGAUUUGCCAUUUU---GCCAACGUUUUAUGGCCGUUUAAUGUGCU ------------------------(((((((((((........((((((.---((....((.((((((.-....))))))))..)).---))))))..))))))))))).......... ( -26.80, z-score = -1.56, R) >droGri2.scaffold_15110 12872897 88 - 24565398 ------------------------AUGGCCAUAAAUUAGAAAAGUUACCC---GACGUGGGACAAGUUG-CUUUGAUUUGCAAGUUU---UCCAACAUUUUAUAGCCGUUUAAUGUGCU ------------------------(((((.(((((........(((....---)))((.(((.((.(((-(........)))).)).---))).))..))))).))))).......... ( -19.20, z-score = -0.99, R) >consensus ______________________AAAUGGCCAUAAAUUAGAAAAGUUCGCC_CUGAUGC_GGACAAGUUGCCUUUGAUUUGCCAGUUUUG_UUCGCCAUUUUAUGGCCGUUUAAUGUGCU ........................(((((((((((........(((.......)))...((.((((((......))))))))................))))))))))).......... (-17.29 = -16.91 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:16 2011