| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,204,372 – 7,204,422 |
| Length | 50 |
| Max. P | 0.958971 |
| Location | 7,204,372 – 7,204,422 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 94.67 |
| Shannon entropy | 0.07346 |
| G+C content | 0.56667 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -17.85 |
| Energy contribution | -17.97 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7204372 50 + 24543557 UCUGGGUCCUCGGUUCUGCGAAUUGGGAUCUGGGAACCGGGAUGUGGGAU ((((.((((.(((((((..((.......))..))))))))))).)))).. ( -18.70, z-score = -1.68, R) >droSim1.chr3L 6712657 50 + 22553184 UCUGGGUCCUCGGUUCUGCGAAUAGGGAUCUGGGAUCUGGGAUGUGGGUU ((..((((((.((((((.......)))))).))))))..))......... ( -18.30, z-score = -2.07, R) >droSec1.super_2 7130658 50 + 7591821 UCUGGGUCCUCGGUUCUGCGAAUAGGGAUCUGGGAUCUGGGAUGUGGGUU ((..((((((.((((((.......)))))).))))))..))......... ( -18.30, z-score = -2.07, R) >consensus UCUGGGUCCUCGGUUCUGCGAAUAGGGAUCUGGGAUCUGGGAUGUGGGUU ((((((((((.((((((.......)))))).))))))))))......... (-17.85 = -17.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:11 2011