| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,183,887 – 7,183,937 |
| Length | 50 |
| Max. P | 0.734424 |
| Location | 7,183,887 – 7,183,937 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -11.30 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.15 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7183887 50 - 24543557 UUACGCGCUCACGCGUCCCAAAAACAAGAAAUUGGCCAGCGCCAAAUGUA ..(((((....)))))...............(((((....)))))..... ( -11.30, z-score = -1.15, R) >droSim1.chr3L 6689940 50 - 22553184 UUACGCGCUCACGCGUCCCAAAAACAAGAAAUUGGCCAGCGCCAAAUGUA ..(((((....)))))...............(((((....)))))..... ( -11.30, z-score = -1.15, R) >droSec1.super_2 7110037 50 - 7591821 UUACGCGCUCACGCGUCCCAAAAACAAGAAAUUGGCCAGCGCCAAAUGUA ..(((((....)))))...............(((((....)))))..... ( -11.30, z-score = -1.15, R) >droEre2.scaffold_4784 21598739 50 + 25762168 UUACGCGCUCACGCGUCCCAAAAACAAGAAAUUGGCCAGCGCCAAAUGUA ..(((((....)))))...............(((((....)))))..... ( -11.30, z-score = -1.15, R) >consensus UUACGCGCUCACGCGUCCCAAAAACAAGAAAUUGGCCAGCGCCAAAUGUA ..(((((....)))))...............(((((....)))))..... (-11.30 = -11.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:08 2011