| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,565,142 – 4,565,193 |
| Length | 51 |
| Max. P | 0.668202 |
| Location | 4,565,142 – 4,565,193 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 82.28 |
| Shannon entropy | 0.32271 |
| G+C content | 0.54295 |
| Mean single sequence MFE | -18.57 |
| Consensus MFE | -9.16 |
| Energy contribution | -10.72 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4565142 51 + 23011544 CAAAUCCAAAGCUCAACUCAGCCGGAAGACUGGCUUAG--GAUGAGCUGGCGA--- ....((...((((((.((.((((((....)))))).))--..))))))...))--- ( -19.10, z-score = -2.68, R) >droAna3.scaffold_12943 1764060 56 - 5039921 UAAAUCCGCGGAUUAAACCAGGCGAAAGACUGGCGGAGCGGAGGAGGAGCUGGAUC ....(((((........((((.(....).))))....))))).............. ( -15.20, z-score = -1.21, R) >droEre2.scaffold_4929 4648665 51 + 26641161 CGAAUCCAAAGCUCAACUCAGCCGGAAGACUGGCUUAG--GAUGAGCUGGUGA--- ......((.((((((.((.((((((....)))))).))--..))))))..)).--- ( -20.10, z-score = -3.00, R) >droYak2.chr2L 4582781 51 + 22324452 CGCAUCCAAAGCUCAAGUCAGACGGAAGACUGGCUUAG--GAUGAGCUGGUGA--- ..((((...((((((((((((.(....).))))))...--..)))))))))).--- ( -18.80, z-score = -2.51, R) >droSec1.super_5 2657970 51 + 5866729 CGAAUCCAAAGCUCAACUCAGCCGGAAGACUGGCUUAG--GAUGAGCUGGCGA--- ....((...((((((.((.((((((....)))))).))--..))))))...))--- ( -19.10, z-score = -2.44, R) >droSim1.chr2L 4450204 51 + 22036055 CGAAUCCAAAGCUCAACUCAGCCGGAAGACUGGCUUAG--GAUGAGCUGGCGA--- ....((...((((((.((.((((((....)))))).))--..))))))...))--- ( -19.10, z-score = -2.44, R) >consensus CGAAUCCAAAGCUCAACUCAGCCGGAAGACUGGCUUAG__GAUGAGCUGGCGA___ ....((...((((((.((.((((((....)))))).))....))))))...))... ( -9.16 = -10.72 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:41 2011