| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,168,921 – 7,169,014 |
| Length | 93 |
| Max. P | 0.970402 |
| Location | 7,168,921 – 7,169,014 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 68.76 |
| Shannon entropy | 0.53262 |
| G+C content | 0.37711 |
| Mean single sequence MFE | -17.19 |
| Consensus MFE | -9.94 |
| Energy contribution | -10.82 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7168921 93 + 24543557 UCAAAAAUGCAGCCUGACCCAAAUCCCU-UUUGACUGUAGGCUUCAUUUUGUUUUUGUCGUAUUUUUGCGC-UAGUUUUUUUUCGACUUUUUUUU- ...((((((.((((((...((((.....-))))....)))))).))))))......((((.......((..-..)).......))))........- ( -19.44, z-score = -2.97, R) >droSim1.chr3L 6675064 93 + 22553184 UCAAAAAUGCAGCCUGACCCAAAUCCCU-UUUGACUGCAGGCUUCAUUUUGUUUUUGUCGUAUUUUUGCGC-UAGUUUUUUUC-GACUCUUUUUUU ...((((((.((((((...((((.....-))))....)))))).))))))......((((.......((..-..))......)-)))......... ( -20.82, z-score = -3.07, R) >droSec1.super_2 7095111 91 + 7591821 UCAAAAAUGCAGCCUGACCCAAAUCCCU-UUUGACUGCAGGCUUCAUUUUGUUUUUGUCGUAUUUUUGCGC-UAGUUUUUUU--GACUCUUUUUU- (((((((.((((((((...((((.....-))))....)))))).............(.((((....)))))-..)).)))))--)).........- ( -19.10, z-score = -2.40, R) >droAna3.scaffold_13337 1697881 81 + 23293914 --UCAAAUGCAGCCUGACCCAAAUCCUUUUUUUGCCAGAGGCUUCAUUUUGUUUUUUGUUUUUCGCAUCUGGGUGUUUAUUUU------------- --..(((((.(((((....((((.......))))....))))).)))))...............((((....)))).......------------- ( -12.80, z-score = 0.21, R) >droGri2.scaffold_15110 12817957 70 + 24565398 --UCAUAUGCAGCAUGACCCAAAUCC---UUUGGCUGUGGGCUUCAUUU-GUUUUCGACAUAACACGGCUCAUAAG-------------------- --...((((.(((((((((((...((---...))...))))..)))).(-(((........))))..)))))))..-------------------- ( -13.80, z-score = -0.30, R) >consensus UCAAAAAUGCAGCCUGACCCAAAUCCCU_UUUGACUGCAGGCUUCAUUUUGUUUUUGUCGUAUUUUUGCGC_UAGUUUUUUU__GACU_UUUUUU_ ...((((((.((((((...((((......))))....)))))).)))))).............................................. ( -9.94 = -10.82 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:03 2011