| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,151,742 – 7,151,843 |
| Length | 101 |
| Max. P | 0.917506 |
| Location | 7,151,742 – 7,151,843 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.17 |
| Shannon entropy | 0.47114 |
| G+C content | 0.63128 |
| Mean single sequence MFE | -42.77 |
| Consensus MFE | -20.38 |
| Energy contribution | -20.65 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7151742 101 + 24543557 -----AGAAGACACACGCGAG-AUGACCGCAAGCGGGAUCGUUCCCGGUCUCGCGGUCGCUCCCGUGGUCACUCGCGUGGUCGUUCUCAUGGGCGUUCUCGUUCCAG -----(((((((.((((((((-.(((((((..(((((((((....)))))))))((......)))))))))))))))))))).))))..((((((....)).)))). ( -53.90, z-score = -4.90, R) >droSim1.chr3L 6657878 101 + 22553184 -----AGGAGACACAUCCGGG-AUGAUCGCAAGCGGGAUCGCUCCAGGUCUCGCGGUCGCUCCCGUGGUCACUCGCGUGGUCGUUCUCAUGGGCGUUCUCGUUCCAG -----.((((((.(((.((((-.(((((((..((((((((......))))))))((......))))))))))))).))))))((((....))))........))).. ( -42.20, z-score = -1.49, R) >droSec1.super_2 7077840 101 + 7591821 -----AGGAGACACAUCCGGG-AUGAUCGCAAGCGGGAUCGUUCCAGGUCUCGCGGUCGCUCCCGUGGUCACUCGCGUGGUCGUUCUCAUGGGCGUUCUCGUUCCAG -----.((((((.(((.((((-.(((((((..((((((((......))))))))((......))))))))))))).))))))((((....))))........))).. ( -42.20, z-score = -1.78, R) >droYak2.chr3L 7748742 101 + 24197627 -----AGGAGACACAUUCGUG-AUGAUCGCAAGCGGGAUCGCUCCAGGUCUCGCGGUCGUUCCCGUGGUCACUCGCGUGGCCGUUCUCAUGGGCGUUCUCGUUCCAG -----.((((.(......(((-((((((((..((((((((......))))))))((......))))))))).))))(.(..(((((....)))))..).)))))).. ( -40.00, z-score = -1.41, R) >droEre2.scaffold_4784 21565854 101 - 25762168 -----AGGAGACACAUCCGGG-AUGAUCGCAAGCGGGAUCGCUCCAGGUCUCGUGGUCGUUCCCGUGGUCACUCUCGUGGCCGUUCUCAUGGGCGUUCUCGUUCCAG -----..((((.((...((((-((((((....((((((((......))))))))))))).))))).((((((....)))))))))))).((((((....)).)))). ( -42.00, z-score = -1.90, R) >droAna3.scaffold_13337 1680518 101 + 23293914 -----CGGCGACACAUCCGCG-ACGAUCGUAAGCGGGACCGAUCCCGGUCCCGAGGACGUUCCCGUGGCCACUCCCGGGGCCGCUCCCAUGGCCGUUCUCGUUCCAG -----.((.(((......(((-.....)))....(((((((....)))))))(((((((..((((.((.....))))))((((......)))))))))))))))).. ( -42.10, z-score = -0.51, R) >dp4.chrXR_group6 3909897 101 + 13314419 -----CGGCGACACAUUCGUG-ACGAUCGCAAGCGGGAUCGUUCCCGCUCUCGUGGUCGCUCCCGUGGUCACUCUCGUGGCCGAUCCCAUGGUCGUUCUCGUUCCAG -----.((((((.(((.((.(-((((((((.(((((((....)))))))...))))))).)).))(((((((....))))))).....))))))))).......... ( -41.20, z-score = -2.07, R) >droPer1.super_9 2198681 101 + 3637205 -----CGGCGACACAUCCGUG-ACGAUCGCAAGCGGGAUCGUUCCCGCUCUCGUGGUCGCUCCCGUGGUCACUCUCGUGGCCGAUCCCAUGGUCGUUCUCGUUCCAG -----.(((((.((..(((((-.(((((((.(((((((....)))))))...)))))))......(((((((....)))))))....)))))..))..))))).... ( -42.30, z-score = -2.28, R) >droMoj3.scaffold_6680 3718068 107 - 24764193 AGAAAACGCUCUGCAGCUAGACGAGAUCGCAAAUGCGAUCGCUCUAGCUCUCGCGGCCGUUCCCGUGGGCAUUCCAGGGGGCGGUCCCAGGGGCGUUCGCGUUCUCG .(..(((((((((((((((((.(.((((((....)))))).))))))))...))((((((((((.(((.....)))))))))))))...))))))))..)....... ( -54.40, z-score = -3.72, R) >droGri2.scaffold_15110 11701229 83 - 24565398 ------------------------GAUAGAAAGCGCGACCGUUCUCAUUCGCGUGGACGCUCUCGUGGUCAUUCUCGGGGGCGUUCUCACAACCGAUCUCGUUCUCG ------------------------...((((.((((((..(....)..))))))(((((((((((.((....)).)))))))))))...............)))).. ( -27.40, z-score = -1.15, R) >consensus _____AGGAGACACAUCCGGG_AUGAUCGCAAGCGGGAUCGUUCCAGGUCUCGCGGUCGCUCCCGUGGUCACUCGCGUGGCCGUUCUCAUGGGCGUUCUCGUUCCAG ........................((((((..((((((.(......).))))))((......)))))))).....((.(..(((((....)))))..).))...... (-20.38 = -20.65 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:01 2011