| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,147,553 – 7,147,654 |
| Length | 101 |
| Max. P | 0.661621 |
| Location | 7,147,553 – 7,147,654 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 71.17 |
| Shannon entropy | 0.49513 |
| G+C content | 0.42704 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -12.36 |
| Energy contribution | -14.44 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7147553 101 + 24543557 UAAUCGGGCACAUUU---GUAUAUGUA---UAUCAGGGGA--AACACAUUGAAAAUGCAAUGUGUUAUUAUCUUUUGGGAUAGGGGGCAGGCCAGCCAAAGUGGUAAGA ......(((....((---((...(.((---(..(((((((--(((((((((......)))))))))....)))))))..))).)..))))))).(((.....))).... ( -26.30, z-score = -1.93, R) >droSim1.chr3L 6654136 100 + 22553184 UAAUCGGGCAUAUAC---AUGCCAGU----UAUCAGGCGA--AACGCAUUGAAAAUGCAAUGUGUUAUUAUCUUUUGGGAUAGGGGGCAGGCCAGCCAAAGUGGUAAGA ......(((((....---)))))..(----((((((((..--(((((((((......))))))))).((((((....))))))..((....)).)))....)))))).. ( -28.00, z-score = -1.51, R) >droSec1.super_2 7073728 100 + 7591821 UAAUCGGGCAUAUAC---AUGCCAGU----UAUCAGGGGA--AACACAUUGAAAAUGCAAUGUGUUAUUAUCUUUUGGGAUAGGGGGCAGGCCAGCCAAAGUGGUAAGA ......(((......---.((((..(----((((.(((((--(((((((((......)))))))))....)))))...)))))..)))).))).(((.....))).... ( -29.10, z-score = -2.38, R) >droYak2.chr3L 7744618 103 + 24197627 UAAUCGGGCAUUUGUAUAGUAUAUGCCAGUUAUCGGGGGA--AACACAUUGAAAAUGCAAUGGGUUAUUAUCUGAUGGG----GGAGGAGGGCCGCCAAAGUGGUGGGA ...((.(((((.((.....)).)))))..((((((((...--(((.(((((......))))).)))....)))))))).----.))......(((((.....))))).. ( -26.50, z-score = -1.09, R) >droAna3.scaffold_13337 1676700 89 + 23293914 UAAUCGGGCGUUUAA---AUGCCGCU----UAUCGUGAAACAAAUUCAUUGAAAAUGCAUU----CGUUAUCUUCUGGCA--GAAAGCAAAGUGGUAGAAGC------- .........((((..---.(((((((----(.(((((((.....)))).)))...(((.((----(((((.....)))).--))).))))))))))).))))------- ( -19.70, z-score = -0.83, R) >consensus UAAUCGGGCAUAUAC___AUGCCAGU____UAUCAGGGGA__AACACAUUGAAAAUGCAAUGUGUUAUUAUCUUUUGGGAUAGGGGGCAGGCCAGCCAAAGUGGUAAGA ......(((.......................((((((((..(((((((((......)))))))))....)))))))).....((......)).)))............ (-12.36 = -14.44 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:09:00 2011