| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,145,852 – 7,145,948 |
| Length | 96 |
| Max. P | 0.603192 |
| Location | 7,145,852 – 7,145,948 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.69 |
| Shannon entropy | 0.25592 |
| G+C content | 0.43709 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -18.07 |
| Energy contribution | -18.23 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7145852 96 + 24543557 UGUUGCUGUUGUUGUUUUCUUUGGUGCCGUAAAACUAUAAACAAUUUUU--GGCGGCUUCUCAGUCAACAGCA---ACGGCACGCAAAUGUUUCGCUUUUC-- ((((((((((((((((..((..((.(((((.(((............)))--.))))).))..))..)))))))---)))))).)))...............-- ( -29.60, z-score = -3.14, R) >droSim1.chr3L 6652328 96 + 22553184 UGUUGCUGUUGUUGUUUUCAUUGGUGCCGUAAAACUAUAAACCAUUUUU--GGCGGCUUCUCAGUCAACAGCA---ACGGCACGCAAAUGUUUCGUUUUGC-- ...(((((((((((((...(((((.(((((.(((............)))--.)))))...))))).)))))))---)))))).(((((........)))))-- ( -29.80, z-score = -2.54, R) >droSec1.super_2 7071936 96 + 7591821 UGUUGCUGUUGUUGUUUUCAUUGGUGCCGUAAAACUAUAAACAAUUUUU--GGCGGCUUCUCAGUCAACAGCA---ACGGCACGCAAAUGUUUCGCUUUGC-- ...(((((((((((((...(((((.(((((.(((............)))--.)))))...))))).)))))))---)))))).(((((.(.....))))))-- ( -29.20, z-score = -2.18, R) >droYak2.chr3L 7742597 90 + 24197627 UGUUGCUGUUGCUGUUU-----GAUGCCGUAAA-CUAUAAACAAUUUUU--GGCGGCUUCUCAGUCAACAGCA---ACGGCACGCAAAUGUUUCGCUUUGC-- .(((((((((((((...-----((.(((((...-..((.....))....--.))))).)).))).))))))))---)).....(((((.(.....))))))-- ( -31.50, z-score = -3.14, R) >droEre2.scaffold_4784 21559799 97 - 25762168 UGUUGCUGUUGCUGUUUUCGUUGCUGCCGUAAA-CUAUAAACAAUUUUU--GGCGGCUUCUCAGUCAACAGCA---ACGGCACGCAAAUGUUUCGCUUUGCAU ...(((((((((((((..(...(((((((....-..............)--))))))......)..)))))))---)))))).(((((.(.....)))))).. ( -35.07, z-score = -3.66, R) >droVir3.scaffold_13049 15432337 89 - 25233164 --UUGUUGUUAUUGCCC-----AGUGCCAUAAA-CUAUAAACAAUUUUU-CGGCGGCUUCUCAGUCAACGGCA---GCGGCACGCAAAAGUUUCGUUUUGC-- --....(((..(((((.-----...(((.....-...............-.)))((((....))))...))))---)..))).((((((......))))))-- ( -19.50, z-score = 0.14, R) >droMoj3.scaffold_6680 10974751 93 + 24764193 --UUGUUGCUGUUGCCC-----AGUGCCAUAAA-CUAUAAACAAUUUUUUCGGCGGCUUCUCAGUCAACAGCGAAUGCGGCACGCAAAAGUUUCGUUUUGC-- --.((((((((..(((.-----...(((.....-.................))))))....))).)))))(((((.((((.((......)).)))))))))-- ( -21.65, z-score = 0.25, R) >consensus UGUUGCUGUUGUUGUUUUC_UUGGUGCCGUAAA_CUAUAAACAAUUUUU__GGCGGCUUCUCAGUCAACAGCA___ACGGCACGCAAAUGUUUCGCUUUGC__ ...(((((((((((((.........(((((......................))))).........)))))))...)))))).(((((........))))).. (-18.07 = -18.23 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:59 2011