| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,143,625 – 7,143,787 |
| Length | 162 |
| Max. P | 0.975964 |
| Location | 7,143,625 – 7,143,724 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 90.74 |
| Shannon entropy | 0.15768 |
| G+C content | 0.48788 |
| Mean single sequence MFE | -31.44 |
| Consensus MFE | -25.46 |
| Energy contribution | -26.14 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7143625 99 + 24543557 ---------UUGAUGUCCCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUUGCCACAUCGCAGACAUCUUUCAUUCAUCUCGGAUUAGCAUCCAUUC ---------..((((((..(((((.(.(((.(((((((((....))))))).)).)).....).).)))))..)))))).............((((....)))).... ( -26.90, z-score = -1.79, R) >droSim1.chr3L 6650138 99 + 22553184 ---------UUGAUGUCUCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUCGCCACAUCGCAGAUAUCUUCCAUUCAUCUCGGAUUAGCAUCCAUUC ---------..(((((((.(((((((..((.(((((((((....))))))).)).))....)))...)))).))))))).............((((....)))).... ( -28.50, z-score = -2.43, R) >droSec1.super_2 7069774 99 + 7591821 ---------UUGAUGUCUCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUCGCCACAUCGCAGACAUCUUCCAUUCAUCUCGGAUUAGCAUCCAUUC ---------..(((((((.(((((((..((.(((((((((....))))))).)).))....)))...)))).))))))).............((((....)))).... ( -30.40, z-score = -2.98, R) >droYak2.chr3L 7740322 108 + 24197627 UUGAUGUCGCUGAUGUCUCUGAUGCGUGUGGUGGUGACUGUCAGCGGUCACACACCAAUCUCGCCAUAUCGCAGACAUCUUCCAUUCAUCUCGCAUUAGCAUCCAUUC ..((((.....(((((((.(((((((..((((((((((((....))))))).)))))....)))...)))).))))))).......))))..((....))........ ( -39.70, z-score = -3.43, R) >droEre2.scaffold_4784 21557568 99 - 25762168 ---------UUGAUGUAUCUGAAGCGUCUGGUGGUGACUGUCAACGGUCACACACCAAUCUCGCCAUAUCGCAGACAUCUGCCAUUCAUCUCGAAUUAGCAUCCAUUC ---------..(((((.......(((..((((((((((((....))))))).)))))....)))......((((....))))................)))))..... ( -31.70, z-score = -3.22, R) >consensus _________UUGAUGUCUCUGAUGCGUCUGCUGGUGACUGUCAACGGUCACACACCAAUCUCGCCACAUCGCAGACAUCUUCCAUUCAUCUCGGAUUAGCAUCCAUUC ...........(((((((.(((((((..((.(((((((((....))))))).)).))....)))...)))).))))))).............((((....)))).... (-25.46 = -26.14 + 0.68)
| Location | 7,143,724 – 7,143,787 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 75.87 |
| Shannon entropy | 0.46294 |
| G+C content | 0.51323 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -12.43 |
| Energy contribution | -12.85 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7143724 63 - 24543557 CUCAUUGAGUGGGUUGUAAAAUCAGCGAAAUCGUUGAGACGAGGCCUCCUCCUUCUGGUCAAC ......(((..((((......((((((....)))))).....))))..)))............ ( -17.40, z-score = -1.16, R) >droEre2.scaffold_4784 21557667 63 + 25762168 AUCCAUGAGUGGGUUGUAAAACCAGCGAAAUCGCUGAGACGAGGCCUCCUCCUUCUGUCCAUU ......(((..((((.......(((((....)))))......))))..)))............ ( -16.82, z-score = -1.18, R) >droYak2.chr3L 7740430 63 - 24197627 AUCCGUGAGUGGGUUGUUAAUCCCGCGAAAUCUUUGAGACGAGGCCUCCUCCUUGUGUUCAAU ........(((((........))))).......(((((((((((......)))))).))))). ( -17.50, z-score = -1.85, R) >droSec1.super_2 7069873 63 - 7591821 CUCCACAAGUGGGUUGUAAAAUCAGCGAAAUCGUUGAGACGAGGCCUCCUCCUUCUGGUCAAU ..(((.(((..((..((....((((((....))))))......))..))..))).)))..... ( -18.40, z-score = -1.79, R) >droSim1.chr3L 6650237 63 - 22553184 CUCCACGAGUGGGUUGUAAAAUCAGCGAAAUCGUUGAGACGAGGCCUCCUCCUUCUGGUCAAU ..(((.(((..((..((....((((((....))))))......))..))..))).)))..... ( -18.80, z-score = -1.46, R) >anoGam1.chr2L 3672995 63 + 48795086 CUCGCCGGGCAGGACGUAGAUUCGACCAAAUCGUCGAUGGAAAGCUCCUUCACCGUGACCGAC .((((.(((.(((((......(((((......)))))......).)))).).))))))..... ( -16.20, z-score = 0.36, R) >consensus CUCCACGAGUGGGUUGUAAAAUCAGCGAAAUCGUUGAGACGAGGCCUCCUCCUUCUGGUCAAU ......(((..((((......((((((....)))))).....))))..)))............ (-12.43 = -12.85 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:58 2011