Locus 6498

Sequence ID dm3.chr3L
Location 7,136,199 – 7,136,292
Length 93
Max. P 0.645921
window8948

overview

Window 8

Location 7,136,199 – 7,136,292
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 93.36
Shannon entropy 0.11547
G+C content 0.41846
Mean single sequence MFE -22.90
Consensus MFE -20.22
Energy contribution -19.90
Covariance contribution -0.32
Combinations/Pair 1.15
Mean z-score -1.55
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.33
SVM RNA-class probability 0.645921
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 7136199 93 - 24543557
CCGCAUUGCCAAAAUUAUGAUUGCAGCUACAAUUCGCCAUUCAGUCAUUAGUUGGAGAUUAAAAACGGGUUU-GUUAAAGCCAAACCUCGCGCA
.(((....((((....(((((((..((........))....)))))))...))))...........((((((-(.......))))))).))).. ( -21.60, z-score =  -1.02, R)
>droSim1.chr3L 6642890 93 - 22553184
CCGCAUUGCCAAAAUUAUGAUUCCAGCUAUAAUUCGCCAUUCAGUCAUUAGUUGGAGAUUAAAAACGGGUUU-GUUAAAGCCAAACCCCGCGUA
.(((................(((((((((.....(........)....))))))))).........((((((-(.......))))))).))).. ( -22.90, z-score =  -2.43, R)
>droSec1.super_2 7062511 93 - 7591821
CCGCAUUGACAAAAUUAUGAUUGCAGCUAUAAUUCGCCAUUCAGUCAUUAGUUGGAGAUUAAAAACGGGUUU-GUUAAAGCCAAACCCCGCGUA
.((((((..(((....(((((((..((........))....)))))))...)))..))).......((((((-(.......))))))).))).. ( -22.80, z-score =  -1.99, R)
>droYak2.chr3L 7732929 94 - 24197627
CCGCAUUGCCAAAAUUAUGAUUGCAGCUACAAUUUGCCAUUCAGUCAUUAGUUGGAGAUUGAAAACGGGUUUGGUUGAAGUCAAACCCCGUGUA
.(((....((((....(((((((..((........))....)))))))...))))...........((((((((......)))))))).))).. ( -24.30, z-score =  -1.32, R)
>droEre2.scaffold_4784 21550271 93 + 25762168
CCGCAUUGCCAAAAUUAUGAUUGCAGCUACAAUUCGCCAUUCAGUCAUUAGUUGGAGAUCGAAAACGGGUUU-GUUAAGGCCAGACCCCGUGUA
.((.((..((((....(((((((..((........))....)))))))...))))..))))...((((((((-(.......)))).)))))... ( -22.90, z-score =  -1.00, R)
>consensus
CCGCAUUGCCAAAAUUAUGAUUGCAGCUACAAUUCGCCAUUCAGUCAUUAGUUGGAGAUUAAAAACGGGUUU_GUUAAAGCCAAACCCCGCGUA
.((((((.((((....(((((((..((........))....)))))))...)))).))).......((((((.((....)).)))))).))).. (-20.22 = -19.90 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:56 2011