| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,110,504 – 7,110,600 |
| Length | 96 |
| Max. P | 0.667276 |
| Location | 7,110,504 – 7,110,600 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 71.55 |
| Shannon entropy | 0.52457 |
| G+C content | 0.65120 |
| Mean single sequence MFE | -36.91 |
| Consensus MFE | -15.48 |
| Energy contribution | -15.43 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7110504 96 - 24543557 UAACGGGACAGCGAGCCGCAAAAUGUGAGCCGCCGCUGCAGGUGCAACGGCGA------UGGCGAUGGCGUCACGGAAGUGGAAGCGGAACCGGAAACGGGU ..........((...((((....((((((((((((.(((....))).))))(.------...)...))).)))))...))))..))....(((....))).. ( -37.00, z-score = -1.23, R) >droSim1.chr3L 6616229 96 - 22553184 UAACGGGACAGCGAGCCGCAAAAUGUGAGCCGCCGCUGCAGGUGCAACGGCGA------UGGCGAUGGCGUCACGGAAGUGGAAGCGAAACCGGAAACGGAU ..........((...((((....((((((((((((.(((....))).))))(.------...)...))).)))))...))))..))....(((....))).. ( -36.80, z-score = -1.80, R) >droSec1.super_2 7036477 96 - 7591821 UAACGGGACAGCGAGCCGCAAAAUGUGAGGCGCCGCUGCAGGUGCAACGGCGA------UGGCGAUGGCGUCACGGAAGUGGAAGCGAAACCGGAAACGGAU ..........((...((((....(((((.((((((.(((....))).))))(.------...)....)).)))))...))))..))....(((....))).. ( -36.20, z-score = -1.84, R) >droAna3.scaffold_13337 1635566 96 - 23293914 UAGCGGGACAGCGAGCCGCAGAAUGUCAGCCGCCGUUGCAGGUGCAAUGGCGAGGCGGCAGGCGAUGGCGUCGGCGACACGGAAGCGGAAACCGUA------ ..((((....((...(((.....((((.(((((((((((....))))))))..((((.((.....)).))))))))))))))..)).....)))).------ ( -44.00, z-score = -2.24, R) >dp4.chrXR_group6 10985228 81 + 13314419 UACCGCGACAGCGAGCCGCAGAACGUGAGCCGUCGCUGCAGAUGCAGGGGCGA------UGGCACUGGCGAGACGGACGCGGAGGAC--------------- ..(((((.(..(..(((((.....))..(((((((((.(.......).)))))------))))...)))..)...).))))).....--------------- ( -33.90, z-score = -1.97, R) >droPer1.super_9 3016156 81 + 3637205 UACCGCGACAGCGAGCCGCAGAACGUGAGCCGUCGCUGCAGAUGCAGGGGCGA------UGGCACUGGCGAGACGGACGCGGAGGAC--------------- ..(((((.(..(..(((((.....))..(((((((((.(.......).)))))------))))...)))..)...).))))).....--------------- ( -33.90, z-score = -1.97, R) >droVir3.scaffold_13049 15393507 90 + 25233164 UAACGGGACAGCGCGCAACAAUACGUGACUCGGCGCUGCAGCUGCGAGGGCAG------CGGCAAUGUCGUCGCGGUCUCGGACUCGAUGUCGCAC------ ...((((((.(....).......((((((..((((.(((.(((((....))))------).))).))))))))))))))))(((.....)))....------ ( -36.60, z-score = -0.83, R) >consensus UAACGGGACAGCGAGCCGCAAAAUGUGAGCCGCCGCUGCAGGUGCAACGGCGA______UGGCGAUGGCGUCACGGACGCGGAAGCGAAACCGGAA______ ..........((...((((....(((....(((((.(((...(((....))).........))).)))))..)))...))))..))................ (-15.48 = -15.43 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:55 2011