| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,091,560 – 7,091,653 |
| Length | 93 |
| Max. P | 0.814497 |
| Location | 7,091,560 – 7,091,653 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.63 |
| Shannon entropy | 0.36265 |
| G+C content | 0.37953 |
| Mean single sequence MFE | -24.83 |
| Consensus MFE | -16.25 |
| Energy contribution | -16.48 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814497 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 7091560 93 - 24543557 GUUGCAGCGUUUUUGAAUGCUGUAUGCUAUAUGCUGGAU-------UCUGUGUUCUGUGUUC-UUUGCAGAUUAAUACUUGCAAUUUGAACAUUUCAGCAC (((((((((((....))))))))).))....(((((((.-------..........((((((-.((((((........))))))...))))))))))))). ( -28.00, z-score = -2.70, R) >droSim1.chr3L 6597473 86 - 22553184 GCUGCAGCGUUUUUGAAUGCUUUAUGCUAUAUGCUGGA--------------UUCUGUGUUC-UUUGCAGAUUAAUACUUGCAAUUUGAACAUUUCAGCAC ((((.((((((....)))))).)).))....(((((((--------------....((((((-.((((((........))))))...))))))))))))). ( -25.50, z-score = -2.71, R) >droSec1.super_2 7017825 93 - 7591821 GCUGCAGCGUUUUUGAAUGCUUUAUGCUAUAUGCUGGAU-------UCUGUGUUCUGUGUUC-UUUGCAGAUUAAUACUCGCAAUUUGAACAUUUCAGCAC ((((.((((((....)))))).)).))....(((((((.-------..........((((((-.((((((.......)).))))...))))))))))))). ( -22.10, z-score = -0.67, R) >droYak2.chr3L 7685669 86 - 24197627 GCAGCAGCGUUUUUGAAUGCUCAAUGCUGUAUUCUGUA--------------UGCUGUGUUC-UUUGCAGAUUAAUACUUGCAAUUUGAACAUUUCAGCAC ((.(((((((....((((((........))))))...)--------------))))))((((-.((((((........))))))...))))......)).. ( -27.30, z-score = -2.55, R) >droEre2.scaffold_4784 21505330 101 + 25762168 GCUGCAGCGUUUUUGAAUGCUGUAUGCUAUAUGCUGUAUGGUGUACUUUGUGUUCUGUGUUCUUUUGCAGAUUAAUACUUGCAAUUUGAGCAUUUCAGCAC ((((..........((((((.(((((((((((...)))))))))))...)))))).((((((..((((((........))))))...))))))..)))).. ( -31.00, z-score = -2.25, R) >droAna3.scaffold_13337 1618781 78 - 23293914 ------GUUAGUUUGCUGGCU-UGUCUUGUGUUCUGAG--------------CUGAGUAUUC-UUUG-AGAUUAAUACUUGCAAUUUGAACAUUUCAGCAC ------(((((....))))).-(((...((((((...(--------------(.(((((((.-....-.....))))))))).....))))))....))). ( -15.10, z-score = 0.27, R) >consensus GCUGCAGCGUUUUUGAAUGCUGUAUGCUAUAUGCUGGA______________UUCUGUGUUC_UUUGCAGAUUAAUACUUGCAAUUUGAACAUUUCAGCAC ((...((((((....))))))....))....(((((((..................((((((..((((((........))))))...))))))))))))). (-16.25 = -16.48 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:54 2011