| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,083,930 – 7,084,043 |
| Length | 113 |
| Max. P | 0.572317 |
| Location | 7,083,930 – 7,084,043 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 71.21 |
| Shannon entropy | 0.48840 |
| G+C content | 0.43490 |
| Mean single sequence MFE | -15.69 |
| Consensus MFE | -8.94 |
| Energy contribution | -9.18 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7083930 113 - 24543557 UUAACUUAACUUAGUUAAGUUCAUAACUAACAAGGUCCCUUUCUUUUCUCUCUCUGCACUUCGGCGAUUGGCAUUUGAAUUUUUAUGGCCAAUCCGCCGCUCCACAUUCACUC ..((((((((...))))))))..........(((....)))....................(((((((((((...(((....)))..)))))).))))).............. ( -22.00, z-score = -2.60, R) >droEre2.scaffold_4784 21497469 103 + 25762168 ----------ACAGUAAUCCAAAGCAACCUGAUUAGGUUUCCCAUUUCUCUCUCUGCACCGCGGCGAUUGGCAUUUGAAUUUUUAUGGCCCAUCCGCUGCUCCACAUUCACCC ----------.(((......(((..(((((....))))).....)))......)))....((((((((.(((...(((....)))..))).)).))))))............. ( -18.60, z-score = 0.10, R) >droYak2.chr3L 7677403 94 - 24197627 ------------------UCAUGUUAUAUAAAGAGUGCGCCCUUUUUCUUUCUCUGCACCUCGUCGAUGGGCAUUUGAA-UUUUAUGGCCAAUCCGCUGCUCCACAUUCACUC ------------------..((((........(((((((...............)))).)))((.(((((.(((.....-....))).)).))).))......))))...... ( -13.26, z-score = 1.08, R) >droSec1.super_2 7010252 91 - 7591821 ----------------------GUAACUUAACUUACUACUUUCUUUUCUCUCUCUGCACUUCGGCGAUUGGCAUUUGAAUUUUUAUGACCAAUCCGCUGCUCCACAUUCACUC ----------------------((((......)))).........................(((((((((((((..........))).))))).))))).............. ( -13.30, z-score = -2.91, R) >droSim1.chr3L 6589930 91 - 22553184 ----------------------GUAACUUAACUUACUACUUUCUUUUCUCUCUCUGCACUUCGGCGAUUGGCAUUUGAAUUUUUAUGGCCCAUCCGCUGCUCCACAUUCACUC ----------------------((((......)))).........................(((((((.(((...(((....)))..))).)).))))).............. ( -11.30, z-score = -1.22, R) >consensus ______________________GUAACUUAAAUUACGACUUUCUUUUCUCUCUCUGCACUUCGGCGAUUGGCAUUUGAAUUUUUAUGGCCAAUCCGCUGCUCCACAUUCACUC .............................................................(((((((.(((...(((....)))..))).)).))))).............. ( -8.94 = -9.18 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:51 2011