| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,063,886 – 7,063,939 |
| Length | 53 |
| Max. P | 0.792449 |
| Location | 7,063,886 – 7,063,939 |
|---|---|
| Length | 53 |
| Sequences | 11 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 90.33 |
| Shannon entropy | 0.21382 |
| G+C content | 0.43645 |
| Mean single sequence MFE | -11.53 |
| Consensus MFE | -10.25 |
| Energy contribution | -9.78 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7063886 53 - 24543557 UGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACACUU-UUGAUUGCCGGCG .(((.((((.....(((.(((........)))..)))...-..))))))).... ( -12.20, z-score = -1.82, R) >droSim1.chr3L 6569900 53 - 22553184 UGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACACUU-UUGAUUGCCGGCG .(((.((((.....(((.(((........)))..)))...-..))))))).... ( -12.20, z-score = -1.82, R) >droSec1.super_2 6990371 53 - 7591821 UGGCUUAUCUCUGAUGUACACCUAAUUAUGUGGCACAC-UUUUGAUUGCCGGGG .(((..(((.....(((.(((........)))..))).-....))).))).... ( -9.80, z-score = -0.14, R) >droYak2.chr3L 7651661 53 - 24197627 GGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACACUU-UUGAUUGCUGGCG .(((.((((.....(((.(((........)))..)))...-..))))))).... ( -9.90, z-score = -0.94, R) >droEre2.scaffold_4784 21470717 53 + 25762168 UGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCGCACUU-UUGAUUGCCGGCG .(((.((((.....(((.(((........)))..)))...-..))))))).... ( -12.50, z-score = -1.45, R) >droAna3.scaffold_13337 1591546 52 - 23293914 UGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACACUUUUUGAUUGCCGG-- .(((.((((...(((((.(((........)))..))).))...)))))))..-- ( -12.00, z-score = -2.35, R) >dp4.chrXR_group6 10938570 51 + 13314419 CGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACACUU-UUGAUUGCUGG-- ((((.((((.....(((.(((........)))..)))...-..)))))))).-- ( -12.00, z-score = -2.75, R) >droWil1.scaffold_180698 1914529 54 + 11422946 UGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACACUUUUUGAUUGUUUUGG ....(((((...(((((.(((........)))..))).))...)))))...... ( -6.50, z-score = 0.06, R) >droVir3.scaffold_13049 7515418 54 - 25233164 UGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACGCUUGCUGAUUGCCGACG .(((.((((..((((((.(((........)))..))).)))..))))))).... ( -11.70, z-score = -1.30, R) >droMoj3.scaffold_6680 5764917 54 - 24764193 UGGCUAAUCUCUGAUGUGCACUUAAUUAUGUGGCACGCUUGCUGAUUGCCGGCG .(((.((((..((((((((((........)).))))).)))..))))))).... ( -14.80, z-score = -1.24, R) >droGri2.scaffold_15110 19200301 54 + 24565398 UGGCUAAUCUCUGAUGUACACUUAAUUAAGUGGCACGCUUGCUGAUUGCCGACG .(((.((((..((((((.(((((....)))))..))).)))..))))))).... ( -13.20, z-score = -1.78, R) >consensus UGGCUAAUCUCUGAUGUACACUUAAUUAUGUGGCACACUU_UUGAUUGCCGGCG .(((.((((.....(((.(((........)))..)))......))))))).... (-10.25 = -9.78 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:50 2011