| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,058,527 – 7,058,596 |
| Length | 69 |
| Max. P | 0.844629 |
| Location | 7,058,527 – 7,058,596 |
|---|---|
| Length | 69 |
| Sequences | 11 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 80.96 |
| Shannon entropy | 0.37121 |
| G+C content | 0.38431 |
| Mean single sequence MFE | -14.16 |
| Consensus MFE | -8.84 |
| Energy contribution | -8.61 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7058527 69 + 24543557 GCAAGAGUCUCA-----ACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUCAGCAA ((..((((...(-----((((..........)))))....))))((((((....))))))..........)).. ( -14.60, z-score = -2.77, R) >droSim1.chr3L 6564034 69 + 22553184 GCAAGAGUCUCA-----ACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUCAGCCA ....((((...(-----((((..........)))))....))))((((((....))))))..(((.....))). ( -14.90, z-score = -2.88, R) >droSec1.super_2 6984960 69 + 7591821 GCAAGAGUCUCA-----ACAAUUUCUCAUAUUUGUUUACAAUUCGUGCAUACAAAUGCGCAAGGUUAUCAGCCA ....((((...(-----((((..........)))))....))))((((((....))))))..(((.....))). ( -13.00, z-score = -1.85, R) >droYak2.chr3L 7646312 62 + 24197627 GCAAGAGUCUCA-----ACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUA------- ....((((...(-----((((..........)))))....))))((((((....)))))).......------- ( -12.20, z-score = -2.17, R) >droEre2.scaffold_4784 21465498 69 - 25762168 GCAAGAGUCUCA-----ACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUCAGCCA ....((((...(-----((((..........)))))....))))((((((....))))))..(((.....))). ( -14.90, z-score = -2.88, R) >droAna3.scaffold_13337 1587270 68 + 23293914 GCAAGAGCCUCA-----ACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUGCUGCCA- (((..(((((.(-----((((..........)))))........((((((....)))))).)))))..)))..- ( -18.00, z-score = -2.30, R) >dp4.chrXR_group6 10932945 69 - 13314419 UCGAGAGUCUCCUCUACACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUAUAAAUGCGCAAGGUUGUC----- ..(((((...............)))))..........((((((.((((((....))))))..)))))).----- ( -14.76, z-score = -2.45, R) >droPer1.super_9 2962366 69 - 3637205 UCGAGAGUCUCCUCUACACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUAUAAAUGCGCAAGGUUGUC----- ..(((((...............)))))..........((((((.((((((....))))))..)))))).----- ( -14.76, z-score = -2.45, R) >droVir3.scaffold_13049 7510631 63 + 25233164 GCAAUGUGCUCA-----ACAAUUUUUCAUAUUUGCUUACAGUACGUGCAUACAAAUGCGCAAGGUUUU------ ((((((((....-----.........)))).)))).........((((((....))))))........------ ( -10.52, z-score = 0.42, R) >droMoj3.scaffold_6680 5760018 63 + 24764193 GCAAUGUGCUCA-----GCAAUUUUUCAUAUAUGCUUACAGUACGUGCAUAUAAAUGCGCAAGGUGUC------ (((..(((((.(-----(((............))))...)))))((((((....))))))....))).------ ( -14.10, z-score = -0.22, R) >droGri2.scaffold_15110 19193619 63 - 24565398 AAAAUGUGCUGA-----ACAAUUUCUCAUAUUCGUUUACAGUACGUGCAUAUAAAUGCGCAAGGUGUU------ .....(((((((-----(((((.......))).)))..))))))((((((....))))))........------ ( -14.00, z-score = -1.28, R) >consensus GCAAGAGUCUCA_____ACAAUUUCUCAUAUUUGUUUACAAUUCGCGCAUACAAAUGCGCAAGGUUAUC_____ ............................................((((((....)))))).............. ( -8.84 = -8.61 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:49 2011