| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,055,209 – 7,055,284 |
| Length | 75 |
| Max. P | 0.997043 |
| Location | 7,055,209 – 7,055,284 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 94.40 |
| Shannon entropy | 0.09659 |
| G+C content | 0.40912 |
| Mean single sequence MFE | -19.24 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.44 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7055209 75 + 24543557 CGAAUGCAAAGAAACGCCAAUAAAAGCUCAAAAUUAACUUGAAUGGGCGGCAUGCAUUCGAUGAUUAAUACAGUG ((((((((......((((.....(((...........))).....))))...))))))))............... ( -17.60, z-score = -2.36, R) >droSim1.chr3L 6560643 75 + 22553184 CGAAUGCAAAGAAACGCCAAUAAGAGCUCAAAAUUAACUCGAAUGGGCGGCAUGCAUUCGAUGAUUAAUACAGUG ((((((((......((((.....(((...........))).....))))...))))))))............... ( -19.80, z-score = -2.88, R) >droSec1.super_2 6981585 75 + 7591821 CGAAUGCAAAGAAACGCCAAUAAGAGCUCAAAAUUAACUCGAAUGGGCGGCAUGCAUUCGAUGAUUAAUACAGUG ((((((((......((((.....(((...........))).....))))...))))))))............... ( -19.80, z-score = -2.88, R) >droYak2.chr3L 7642736 75 + 24197627 CGAAUGCAAAGAAACGCCAAUGAAAGCUCAAAAUUAACACGAACGGGCGUCAUGCAUUCGAUGAUUAAUACAGUG ((((((((.....(((((..(((....))).........(....))))))..))))))))............... ( -17.00, z-score = -2.02, R) >droEre2.scaffold_4784 21461862 74 - 25762168 CGAAUGCAA-GAAACGCCAAUGAAAGCUCAAAAUUAGCUCGAAUGGGCGUCAUGCAUUCGAUGAAUAAUACAGUG ((((((((.-((..((((.((...((((.......))))...)).)))))).))))))))............... ( -22.00, z-score = -3.36, R) >consensus CGAAUGCAAAGAAACGCCAAUAAAAGCUCAAAAUUAACUCGAAUGGGCGGCAUGCAUUCGAUGAUUAAUACAGUG ((((((((......((((.....(((...........))).....))))...))))))))............... (-17.00 = -17.44 + 0.44)
| Location | 7,055,209 – 7,055,284 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 94.40 |
| Shannon entropy | 0.09659 |
| G+C content | 0.40912 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -19.66 |
| Energy contribution | -19.14 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -3.40 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.03 |
| SVM RNA-class probability | 0.997043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7055209 75 - 24543557 CACUGUAUUAAUCAUCGAAUGCAUGCCGCCCAUUCAAGUUAAUUUUGAGCUUUUAUUGGCGUUUCUUUGCAUUCG ...............((((((((...((((.((..(((((.......)))))..)).))))......)))))))) ( -18.60, z-score = -2.91, R) >droSim1.chr3L 6560643 75 - 22553184 CACUGUAUUAAUCAUCGAAUGCAUGCCGCCCAUUCGAGUUAAUUUUGAGCUCUUAUUGGCGUUUCUUUGCAUUCG ...............((((((((...((((.((..(((((.......)))))..)).))))......)))))))) ( -20.80, z-score = -3.32, R) >droSec1.super_2 6981585 75 - 7591821 CACUGUAUUAAUCAUCGAAUGCAUGCCGCCCAUUCGAGUUAAUUUUGAGCUCUUAUUGGCGUUUCUUUGCAUUCG ...............((((((((...((((.((..(((((.......)))))..)).))))......)))))))) ( -20.80, z-score = -3.32, R) >droYak2.chr3L 7642736 75 - 24197627 CACUGUAUUAAUCAUCGAAUGCAUGACGCCCGUUCGUGUUAAUUUUGAGCUUUCAUUGGCGUUUCUUUGCAUUCG ...............((((((((.((((((.(((((.........))))).......))))))....)))))))) ( -20.10, z-score = -2.68, R) >droEre2.scaffold_4784 21461862 74 + 25762168 CACUGUAUUAUUCAUCGAAUGCAUGACGCCCAUUCGAGCUAAUUUUGAGCUUUCAUUGGCGUUUC-UUGCAUUCG ...............((((((((.((((((.((..(((((.......)))))..)).))))))..-.)))))))) ( -25.20, z-score = -4.78, R) >consensus CACUGUAUUAAUCAUCGAAUGCAUGCCGCCCAUUCGAGUUAAUUUUGAGCUUUUAUUGGCGUUUCUUUGCAUUCG ...............((((((((...((((.((..(((((.......)))))..)).))))......)))))))) (-19.66 = -19.14 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:48 2011