| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,046,235 – 7,046,334 |
| Length | 99 |
| Max. P | 0.991947 |
| Location | 7,046,235 – 7,046,334 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.25253 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -19.10 |
| Energy contribution | -19.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.66 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.991947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7046235 99 + 24543557 UUAUAGUUACCGAUAGUUAGUUACGUAAUAAUUUCUUUUUGCAUUUAACCAAUGCAUUUCCAACUACAACAUUUGUAAUGUAAUUAAACGUAAUUGUAA .(((((((((......((((((((((.............((((((.....))))))........((((.....))))))))))))))..))))))))). ( -19.10, z-score = -2.66, R) >droSec1.super_2 6972737 99 + 7591821 UUAUAGUUACCGAUAGUUAGUUACGUAAUAAUUUCUUUUUGCAUUUAACCAAUGCAUUUCCAACUACAACAUUUGUAAUGUAAUUAAACGUAAUUGUAA .(((((((((......((((((((((.............((((((.....))))))........((((.....))))))))))))))..))))))))). ( -19.10, z-score = -2.66, R) >droSim1.chr3L 6551686 99 + 22553184 UUAUAGUUACCGAUAGUUAGUUACGUAAUAAUUUCUUUUUGCAUUUAACCAAUGCAUUUCCAACUACAACAUUUGUAAUGUAAUUAAACGUAAUUGUAA .(((((((((......((((((((((.............((((((.....))))))........((((.....))))))))))))))..))))))))). ( -19.10, z-score = -2.66, R) >consensus UUAUAGUUACCGAUAGUUAGUUACGUAAUAAUUUCUUUUUGCAUUUAACCAAUGCAUUUCCAACUACAACAUUUGUAAUGUAAUUAAACGUAAUUGUAA .(((((((((......((((((((((.............((((((.....))))))........((((.....))))))))))))))..))))))))). (-19.10 = -19.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:46 2011