| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,028,719 – 7,028,779 |
| Length | 60 |
| Max. P | 0.985122 |
| Location | 7,028,719 – 7,028,779 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 89.73 |
| Shannon entropy | 0.18342 |
| G+C content | 0.49359 |
| Mean single sequence MFE | -21.22 |
| Consensus MFE | -16.44 |
| Energy contribution | -16.08 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7028719 60 + 24543557 UUUUUUCUCUGUGCCGUUGUGGUGGGCAACACGAAAUUGCCUGCCUGCCCAUAACGAUGU ..............((((((((..((((.((......))..))))..).))))))).... ( -18.50, z-score = -2.08, R) >droAna3.scaffold_13337 1558632 55 + 23293914 UUUUUUCUCCCUGCCGUUGUGGCGGGCAACGCGAAAUUGCCCGGC-----AUAAUGAUGU ..............(((((((.(((((((.......))))))).)-----)))))).... ( -21.30, z-score = -2.49, R) >droEre2.scaffold_4784 21431622 59 - 25762168 UUUUUUCUCUGUGCCGUUGUGGUGGGCAACACGAAAUUGCCUGCCUGCC-AUAACGAUGU ..............((((((((..((((.((......))..))))..))-)))))).... ( -22.30, z-score = -3.60, R) >droYak2.chr3L 7614263 59 + 24197627 UUUUUUCUCUGUGCCGUUGUGGCGGGCAACACAAAAUUGCCUGCCUGCC-AUAACGAUGU ..............((((((((((((((.((......))..))))))))-)))))).... ( -24.80, z-score = -4.35, R) >droSec1.super_2 6955386 59 + 7591821 UUUUUUCUUUGUGCCGUUGUGGUGGGCAACACGAAAUUGCCUGCCUGUC-AUAACGAUGU ..............((((((((..((((.((......))..))))..))-)))))).... ( -19.20, z-score = -2.55, R) >consensus UUUUUUCUCUGUGCCGUUGUGGUGGGCAACACGAAAUUGCCUGCCUGCC_AUAACGAUGU ..............(((((((((((((((.......))))))))).....)))))).... (-16.44 = -16.08 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:39 2011