| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,028,320 – 7,028,430 |
| Length | 110 |
| Max. P | 0.895431 |
| Location | 7,028,320 – 7,028,430 |
|---|---|
| Length | 110 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Shannon entropy | 0.42058 |
| G+C content | 0.63574 |
| Mean single sequence MFE | -50.23 |
| Consensus MFE | -28.13 |
| Energy contribution | -28.26 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7028320 110 + 24543557 GCAUUCGCGGUCCGCCGGGACCGCCGGGUCCGCCAGGACCCAAAGGCGAAACGGCCCCCUAUCCGCCCUUUGUGGAGACGACGAG---UGCGGGGGCUGUGAGUAUUGCAA-AU------ (((((((((((((....)))))...((((((....))))))....)))))(((((((((..(((((.....))))).((.....)---)..)))))))))......)))..-..------ ( -56.50, z-score = -3.04, R) >droGri2.scaffold_15110 19164203 109 - 24565398 GUAUACGUGGCCCGCCCGGACCACCAGGUCCGCCGGGCCCCAAAGGUGAAACGCCAGCAUAUCCGCCUUUCAUCGAGACACCAAG---UGCGGGGGCUGUAAGUAUUAAAAU-------- ..(((((.((((((..((((((....)))))).)))))).)...((((...))))(((...((((((((((.....))....)))---.))))).)))....))))......-------- ( -40.50, z-score = -1.65, R) >droVir3.scaffold_13049 7480201 109 + 25233164 GUAUACGUGGUCCACCUGGGCCGCCUGGUCCGCCGGGUCCCAAAGGUGAAACACCAUCGUAUCCGCCCUUUGUGGAGACACCAAG---UGCGGGGGCUGUAAGUAUAAAACU-------- .((((((((((.((((((((..((((((....)))))))))..)))))....))))).((..((((.(((.(((....))).)))---.))))..)).....))))).....-------- ( -46.00, z-score = -2.36, R) >droMoj3.scaffold_6680 5731229 109 + 24764193 GUAUACGCGGUCCACCUGGGCCGCCCGGUCCGCCGGGCCCCAAAGGUGAUACAGCCUCGUAUCCGCCCUUUGUGGAAACACCAAG---UCCGGGGGCUGUAAGUAUUCAAAU-------- (.((((......((((((((..((((((....)))))))))..))))).((((((((.....(((..(((.(((....))).)))---..))))))))))).)))).)....-------- ( -50.70, z-score = -3.57, R) >droWil1.scaffold_180698 1867376 106 - 11422946 GCAUACGUGGUCCUCCGGGUCCACCGGGUCCGCCUGGGCCCAAGGGCGAACCGGCUGCAUAUCCGCCCUUCUUAGAGCCAACCAGCAGUGCGGGGGCUGUAAGUAG-------------- ......((((.((....)).)))).((((((....))))))(((((((...............)))))))((((.((((..((.((...)))).)))).))))...-------------- ( -42.26, z-score = 0.33, R) >droPer1.super_9 2931410 117 - 3637205 GUAUACGUGGCCCCCCCGGGCCGCCGGGUCCACCUGGACCCAAGGGCGAAGCGGCUGCCUAUCCACCCUUUGUCGAGACAACGAG---UGCGGGGGCUGUGAGUAUCCAAAUAUUAAAAU ((((.((..((((((..((((.(((((((((....))))))....((...))))).))))...(((.(.((((....)))).).)---)).))))))..)).)))).............. ( -49.70, z-score = -1.98, R) >dp4.chrXR_group6 10901685 117 - 13314419 GUAUACGUGGCCCCCCCGGGCCGCCGGGUCCACCUGGACCCAAGGGCGAAGCGGCUGCCUAUCCACCCUUUGUCGAGACAACGAG---UGCGGGGGCUGUGAGUAUCCAAAUAUUAAAAU ((((.((..((((((..((((.(((((((((....))))))....((...))))).))))...(((.(.((((....)))).).)---)).))))))..)).)))).............. ( -49.70, z-score = -1.98, R) >droAna3.scaffold_13337 1558353 111 + 23293914 GUAUACGGGGUCCUCCGGGACCGCCGGGUCCGCCCGGGCCCAAAGGGGAGCCGGCCGUCUAUCCGCCCUUCGUGGAGACAACGAG---UGCGGGGGCUGUAAGUGUUGCAUUAU------ ((((((..(((((....((((.(((((((((....))))))...((....))))).))))..((((.((.((((....).)))))---.)))))))))....))).))).....------ ( -48.60, z-score = 0.29, R) >droEre2.scaffold_4784 21431160 110 - 25762168 GCAUUCGCGGUCCGCCGGGACCGCCGGGUCCGCCCGGCCCCAAAGGCGAAACGGCCCCCUAUCCGCCCUUUGUGGAGACGACGAG---UGCGGGGGCUGUGAGUAUUGCAA-AU------ (((((((((((((....)))))((((((....)))))).......)))))(((((((((..(((((.....))))).((.....)---)..)))))))))......)))..-..------ ( -56.80, z-score = -2.58, R) >droYak2.chr3L 7613935 110 + 24197627 GCAUUCGCGGUCCGCCGGGACCGCCGGGUCCGCCCGGGCCCAAAGGCGAAACGGCCCCCUAUCCGCCCUUUGUGGAGACGACGAG---UGCGGGGGCUGUAAGUAUUGCAA-AU------ (((((((((((((....)))))...((((((....))))))....)))))(((((((((..(((((.....))))).((.....)---)..)))))))))......)))..-..------ ( -55.70, z-score = -2.17, R) >droSec1.super_2 6955098 110 + 7591821 GCAUUCGCGGUCCACCGGGACCGCCGGGUCCGCCCGGACCCAAAGGCGAAACGGCCCCCUAUCCGCCCUUUGUGGAGACGACGAG---UGCGGGGGCUGUGAGUAUUGCAA-AU------ (((((((((((((....)))))...((((((....))))))....)))))(((((((((..(((((.....))))).((.....)---)..)))))))))......)))..-..------ ( -56.10, z-score = -3.05, R) >consensus GUAUACGCGGUCCGCCGGGACCGCCGGGUCCGCCCGGACCCAAAGGCGAAACGGCCGCCUAUCCGCCCUUUGUGGAGACAACGAG___UGCGGGGGCUGUAAGUAUUGAAAUAU______ .....((((((((....))))).(((((....)))))........)))..((((((.....(((((..((((.........))))....))))))))))).................... (-28.13 = -28.26 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:38 2011