| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,014,449 – 7,014,500 |
| Length | 51 |
| Max. P | 0.759343 |
| Location | 7,014,449 – 7,014,500 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 89.80 |
| Shannon entropy | 0.18165 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -8.60 |
| Consensus MFE | -6.76 |
| Energy contribution | -7.08 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.759343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7014449 51 - 24543557 AGGUCAUCAUAAAGUCUGAAAAUAUUUUGUGGUAAACCAGUUAGGCAAGUU .(((.((((((((((.(....).))))))))))..)))............. ( -10.40, z-score = -2.40, R) >droEre2.scaffold_4784 21417408 51 + 25762168 AGCUCAUCAUAAAGUCUAAAAGUAUUUUGUGGUAAACCAGUUGUGCAAGUU .((.((.(((((((((.....).)))))))((....)).).)).))..... ( -6.70, z-score = -0.57, R) >droYak2.chr3L 7599085 51 - 24197627 GGGUCAUCAAAAAGUCUAAAAAUAUUUUGUGGUCAGCCAGUUAAGCAAGUU .(..((.(((((.((......)).)))))))..).((.......))..... ( -6.00, z-score = -0.82, R) >droSec1.super_2 6941719 51 - 7591821 AGGUCAUCAUAAAGUCUGAAAAUAUUUUGUGGUAAUCCAGUUAGUCAAGUU .((..((((((((((.(....).))))))))))...))............. ( -9.70, z-score = -3.30, R) >droSim1.chr3L 6490939 51 - 22553184 GGGUCAUCAUAAAGUCUGAAAAUAUUUUGUGGUAAACCAGUUAGUCAAGUU .(((.((((((((((.(....).))))))))))..)))............. ( -10.20, z-score = -2.64, R) >consensus AGGUCAUCAUAAAGUCUGAAAAUAUUUUGUGGUAAACCAGUUAGGCAAGUU .(((.((((((((((.(....).))))))))))..)))............. ( -6.76 = -7.08 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:37 2011