| Sequence ID | dm3.chr3L |
|---|---|
| Location | 7,011,085 – 7,011,179 |
| Length | 94 |
| Max. P | 0.639191 |
| Location | 7,011,085 – 7,011,179 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.46334 |
| G+C content | 0.51607 |
| Mean single sequence MFE | -25.11 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.07 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 7011085 94 + 24543557 UUUUUGGGCGCGCAACAAAC-UUUGUGUUACGCCGCCGCC------GACUCGUUGACUC-AAUAACUGGUUGGCUUCACUCCUCCCUC-UGCACCGAAAAAAA ((((((((((((.((((...-....)))).)))....(((------((((.((((....-..)))).)))))))..............-.)).)))))))... ( -27.00, z-score = -2.39, R) >droSim1.chr3L 6487571 101 + 22553184 AUUUUGGGCGCGCACAAAAC-UUUGUGUUACGCCGCCGCCGCCGCCGACUCGUUGACUC-AAUAACUGGUUGGCUUCACUUCCUCCCCGUGCUCCGCAAAAAA .(((((((((.((((((...-.))))))..)))).........(((((((.((((....-..)))).)))))))......................))))).. ( -26.90, z-score = -0.43, R) >droSec1.super_2 6938341 92 + 7591821 AUUUUGGGCGAGCACAAAAC-UUUGUGUUACGCCGCCG---------ACUCGUUGACUC-AAUAACUGGUUGGCUUCACUUCCUCCCCGUGCUCCGCAAAAAA .((((((((((((((((...-.))))))).))))((((---------(((.((((....-..)))).)))))))......................))))).. ( -29.40, z-score = -3.18, R) >droYak2.chr3L 7595667 91 + 24197627 UUUUUGGGCGCGCACAAAAC-UUUGUGUUACGCCGCCGCCGCC---GACUCGUUGACUCCAAUAACUGGUUGGCUUCACUGCCACC-----CACAAAAAA--- ((((((((((.((((((...-.))))))..))))......(((---((((.((((.......)))).)))))))............-----..)))))).--- ( -27.30, z-score = -1.80, R) >droEre2.scaffold_4784 21414032 87 - 25762168 UUUUUGGGCGCGCACAAAAC-UUUGUGUUACGCCGCCGCC------GACUCGUUGACUC-AAUAACUGGUUGGCUUCACUCCCACC-----CAAAAAAAA--- ((((((((((.((((((...-.))))))..))))...(((------((((.((((....-..)))).)))))))............-----))))))...--- ( -27.60, z-score = -3.08, R) >dp4.chrXR_group6 10884257 78 - 13314419 -UUUUGGGCGCGUACAAAAAGUUUGUGCUACACCGCCG---------ACUCGUUGACUC-AAUAACUGGUUGCCCCCUGCCUCAGAAGA-------------- -(((((((.((((((((.....))))))........((---------(((.((((....-..)))).)))))......)))))))))..-------------- ( -18.80, z-score = -0.32, R) >droPer1.super_9 2913998 78 - 3637205 -UUUUGGGCGCGUACAAAAAGUUUGUGCUACACCGCCG---------ACUCGUUGACUC-AAUAACUGGUUGCCCCCUGCCUCAGAAGA-------------- -(((((((.((((((((.....))))))........((---------(((.((((....-..)))).)))))......)))))))))..-------------- ( -18.80, z-score = -0.32, R) >consensus UUUUUGGGCGCGCACAAAAC_UUUGUGUUACGCCGCCGCC______GACUCGUUGACUC_AAUAACUGGUUGGCUUCACUCCCACC_C___CACCGAAAA___ ......((((.((((((.....)))))).....))))..............(..((((.........))))..)............................. (-12.19 = -12.07 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:36 2011