| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,998,154 – 6,998,247 |
| Length | 93 |
| Max. P | 0.888121 |
| Location | 6,998,154 – 6,998,247 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 75.37 |
| Shannon entropy | 0.46228 |
| G+C content | 0.48285 |
| Mean single sequence MFE | -28.97 |
| Consensus MFE | -17.97 |
| Energy contribution | -17.67 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6998154 93 + 24543557 CUGGUGACAGGGGG------AGCACGCAGCAAGCUCAUUGAUUGCCAAUCAACUGCAAUCAAAUGGGUUUCGUUCGGCCAGCUUUAAUUCCUGGCUUUA (((....)))....------....((.((((((((((((((((((.........)))))).))))))))).)))))(((((.........))))).... ( -30.20, z-score = -1.42, R) >droYak2.chr3L 7582886 99 + 24197627 CUGGUGACAGGAGGGAUGAGAACUCGGAGCAAGCUCAUUGAUUGCCAAUCAAGUGCAAUCAAAUGGGCUUCGUUCGCCCAGCUUUAAUUCCCGGCUUUA (((....)))..((((.(((......((((((((((((((((((((......).)))))).))))))))).))))......)))....))))....... ( -36.40, z-score = -2.45, R) >droEre2.scaffold_4784 21401395 93 - 25762168 CUGGUGACAUGGGG------AGCUCGGAGCACGCUCAUUGAUUGCCAAUCAAGUGCAAUCAAAUGGGCUUCGUUCGGCCAGCUUUAAUUCCGGGCUUUA .((....))...((------(((((((((...((((((((((((((......).)))))).))))((((......))))))).....))))))))))). ( -33.60, z-score = -2.09, R) >droSec1.super_2 6925460 93 + 7591821 CUGGUGACAGGGGG------AGCACGCAGCAAGCUCAUUGAUUGCCAAUCAACUGCAAUCAAACGGGCUUCGUUCGGCCAGCUUUAUUUCCAGGCUUUA ((((.((.((((.(------.((.((.(((((((((.((((((((.........))))))))..)))))).))))))))..)))).)).))))...... ( -28.80, z-score = -1.05, R) >droSim1.chr3L 6472161 93 + 22553184 CUGGUGACAGGGGG------AGCACGCAGCAAGCUCAUUGAUUGCCAAUCAACUGCAAUCAAAUGGGCUUCGUUCGGCCAGCUUUAAUUCCAGGCUUUA (((....)))((((------(((.((.((((((((((((((((((.........)))))).))))))))).)))))....))))....)))........ ( -30.90, z-score = -1.55, R) >droGri2.scaffold_15110 19137027 73 - 24565398 ------------------------UCGAUGACAGACAUUGAUUGGCAAUCAACUCCAGUCAAAUGAGUUUCCCUUCUAUUGAAUUUGUUUUAUUCGG-- ------------------------.(((.((((((((((((((((.........)))))).))))........(((....)))))))))....))).-- ( -13.90, z-score = -0.63, R) >consensus CUGGUGACAGGGGG______AGCACGCAGCAAGCUCAUUGAUUGCCAAUCAACUGCAAUCAAAUGGGCUUCGUUCGGCCAGCUUUAAUUCCAGGCUUUA ........................((.((((((((((((((((((.........)))))).))))))))).)))))...(((((.......)))))... (-17.97 = -17.67 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:36 2011