| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,992,560 – 6,992,662 |
| Length | 102 |
| Max. P | 0.969236 |
| Location | 6,992,560 – 6,992,662 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.72 |
| Shannon entropy | 0.40483 |
| G+C content | 0.47258 |
| Mean single sequence MFE | -33.98 |
| Consensus MFE | -15.56 |
| Energy contribution | -16.53 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6992560 102 - 24543557 AAUGGGCAGACAAUGAUUGGUCAUUCGAGA-UGGCAUUGACAUUGGCCAGUCAUU--GUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAGGCAGCCCGAA ..(((((.(((((((((((((((.((((..-.....))))...))))))))))))--)))...(((.......((.....)).)))(((.....))).))))).. ( -39.40, z-score = -3.99, R) >droSim1.chr3L 6466671 102 - 22553184 AAUGGUCAGACAAUGAUUGGUCAUUUGAGA-UGGCAUUGACAUUGGCCAGUCAUU--GUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAGGCAACCCGAA ..(((...(((((((((((((((.(..(..-.....)..)...))))))))))))--)))....)))......((.....)).((.(((.....)))...))... ( -31.50, z-score = -1.95, R) >droSec1.super_2 6919944 102 - 7591821 AAUGGUCAGACAAUGAUCGGUCAUUUGUGA-UGGCAUUGACAUUGGCCAGUCAUU--GUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAGGCAGCCCGAA ..(((...(((((((((.(((((..(((.(-......).))).))))).))))))--)))....))).....(((.(......)..(((.....))).))).... ( -31.80, z-score = -1.57, R) >droEre2.scaffold_4784 21395883 102 + 25762168 AAUGGGCAGACAAUGAUUGGUCAUUCGAGA-UGGCAUUGACAUUGGCCAGUCAUU--GUCCAAUCCCAUAAAGGCACAAAGCAGGAGCCACAAAGGCAGCCCGAA ..(((((.(((((((((((((((.((((..-.....))))...))))))))))))--)))...(((.......((.....)).)))(((.....))).))))).. ( -39.40, z-score = -4.09, R) >droYak2.chr3L 7577088 97 - 24197627 -----AAUGACAAUGAUUGGUCAUUUGAGA-UGGCAUUGACAUUGGCCAGUCAUU--GUCCAAUCCAAUAAUGCCACAAAGCAGGAGCCACAAAGGCAGUCCGAA -----...(((((((((((((((.(..(..-.....)..)...))))))))))))--)))...........(((......)))((((((.....)))..)))... ( -30.80, z-score = -2.47, R) >droAna3.scaffold_13337 1528053 86 - 23293914 ----AAGGGACUUUUAGGGGAUACUUGGGGCUGGCAUUGACAUUGUCCUGUUCUCCGGGACAGGACAACAAUGCCACAAAGGAGGUACAA--------------- ----..(..(((((((((.....))))....((((((((...(((((((((((....))))))))))))))))))).....))))).)..--------------- ( -31.00, z-score = -3.03, R) >consensus AAUGGACAGACAAUGAUUGGUCAUUUGAGA_UGGCAUUGACAUUGGCCAGUCAUU__GUCCAAUCCAAUAAUGGCACAAAGCAGGAGCCACAAAGGCAGCCCGAA ........(((((((((((((((.((((........))))...))))))))))))..))).............((.....))....(((.....)))........ (-15.56 = -16.53 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:35 2011