| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,988,936 – 6,989,034 |
| Length | 98 |
| Max. P | 0.897279 |
| Location | 6,988,936 – 6,989,034 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.65 |
| Shannon entropy | 0.48373 |
| G+C content | 0.33679 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -8.80 |
| Energy contribution | -10.05 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.897279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6988936 98 - 24543557 AUAGCCCAGUUUAUUAUUUCUUGAACGUUUAUAGACCCAAUAUAAAAGCGCCUAAUAUGUGCUAAAAAUUUGGAUGCU--GUUGAUUAGCAUCACACUGG .....(((((.................((((((.......))))))(((((.......))))).........((((((--(.....)))))))..))))) ( -20.20, z-score = -1.47, R) >droEre2.scaffold_4784 21392304 97 + 25762168 AUAACCCAGUUUCUUAUAUCUUGACCGUUUAUAG-CGCCAUAUAAAAACGCCUAAUAUGUGCUAAAAACGUUGAUGCU--GCUUAUUAGUAUCAGACUGG .....((((((..............(((((.(((-(((.((((...........)))))))))).))))).(((((((--(.....)))))))))))))) ( -25.90, z-score = -4.22, R) >droYak2.chr3L 7573235 97 - 24197627 UUAGCCCAGUUUAUUAUUUGUUGACCGUUUAUAG-CGCCGUAUUAAAGCGCCUAAUAUGUGCUAAAAAAGUUGAUUCU--GCUGAUUAGUAUUAGACUGG .....((((((((.((((.((..((..(((.(((-(((.((((((.......)))))))))))))))..))..))...--.......)))).)))))))) ( -23.30, z-score = -2.20, R) >droSec1.super_2 6915314 98 - 7591821 AUAACCCAGUUUAUUAUUUUUUGACCGUUUAUAGACCCCAUAUAAAAGCGCCUAAUAUGUUCUAAAAAUUUUGAUGCU--GUUGAUUAGCAUCAGACUGG .....(((((((..............((((.((((...(((((...........))))).)))).))))...((((((--(.....)))))))))))))) ( -20.40, z-score = -3.23, R) >droSim1.chr3L 6463047 98 - 22553184 AUAACCCAGUUUAUUAUUUUUUGACCGUUUAUAGACCUCAUAUAAAAGCGCCUAAUAUGUGCUAAAAAUUUUGAUGCU--GCUGAUUAGCAUCAGACUGG .....(((((((.....(((((.....((((((.......))))))(((((.......))))))))))....((((((--(.....)))))))))))))) ( -21.90, z-score = -2.89, R) >droAna3.scaffold_13337 1524599 90 - 23293914 ------CAGAUAA-UACAGUUUAUAGGUUUCCAAUAAUGGCAUAAAAACAUUUAAUAU---CUCGCGAUUCAGAUUCUAGACUAAUAAAGACUUAACUAG ------.......-.........((((((((((....)))..........((((..((---((........))))..)))).......)))))))..... ( -6.40, z-score = 1.22, R) >consensus AUAACCCAGUUUAUUAUUUUUUGACCGUUUAUAGACCCCAUAUAAAAGCGCCUAAUAUGUGCUAAAAAUUUUGAUGCU__GCUGAUUAGCAUCAGACUGG .....(((((((..................................(((((.......))))).........((((((.........))))))))))))) ( -8.80 = -10.05 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:34 2011