| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,977,650 – 6,977,742 |
| Length | 92 |
| Max. P | 0.554734 |
| Location | 6,977,650 – 6,977,742 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 61.11 |
| Shannon entropy | 0.62048 |
| G+C content | 0.31795 |
| Mean single sequence MFE | -20.55 |
| Consensus MFE | -9.18 |
| Energy contribution | -7.74 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.63 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6977650 92 + 24543557 UAAUAUAAGUGUCCAAACUGUGUGCUGAACUGAGUUUUC---------------AAAGCUACUGC---UUAACACAGAAAUCAAGGGAUAUCUGAUUUUCCAUUGAAAAA .................((((((..((((.......)))---------------)((((....))---)).))))))...((((.(((..........))).)))).... ( -16.80, z-score = -0.60, R) >droSec1.super_2 6904624 110 + 7591821 UAAUAUAAGUGUCCAAAUUGUGUGCUGAACUGAGUUUUUUAUGCUUUUGAUUUGAAAGCUGCUGCUUUUUGACACAGAAAACAAGGGUGACUUGAUUUUCGAUUUAAAAA ........(((((((((..(((((..((((...))))..))))).))))....((((((....)))))).))))).(((((..(((....)))..))))).......... ( -24.80, z-score = -1.75, R) >droSim1.chr3L 6452619 109 + 22553184 UAAUAUAAGUGUCCAAAUUGUGUGCUGAACUGAGUUUUUUAUGCUUUUGAUUUGAAAGCUGCUGCUAUUUGACACAGAAAACAAGGGAGACCUGAUUUUCGCUUUGAAA- ........((((((((((((...((((((........)))).))...)))))))..(((....)))....))))).(((((..(((....)))..))))).........- ( -25.70, z-score = -1.86, R) >droVir3.scaffold_13049 7338757 97 + 25233164 UGGAACGA-UGUUUUUUUUUUUAAAGGAACUAACUAUCUUA------------AGAUAUUGUCGAAUUUCUAGGGAAAGUUCAAAGUAACCUUAAUUUUUCUUUCUUAAC ((((((((-(((((((((....))))))))....((((...------------.))))..))))...)))))(((((((...(((((.......))))).)))))))... ( -14.90, z-score = 0.29, R) >consensus UAAUAUAAGUGUCCAAAUUGUGUGCUGAACUGAGUUUUUUA____________GAAAGCUGCUGCUUUUUGACACAGAAAACAAGGGAGACCUGAUUUUCCAUUUAAAAA ..................(((((.........(((((((..............)))))))...........)))))((((...(((....)))...)))).......... ( -9.18 = -7.74 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:08:32 2011